Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4 129 5e-25 seq167 118 8e-22 seq281 102 6e-17 seq155 87.8 1e-12 seq3665 84.2 2e-11 >seq4 Length=3455462 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||| || ||||| || || ||||| || | || | | |||| ||| Sbjct 2201062 ACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCCTCC 2201121 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| ||||||||||| || || || ||||||||||| || || ||| Sbjct 2201122 AGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGA 2201181 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || || | || | ||||| || | || || |||||||||| || || Sbjct 2201182 ATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCGACCTCAAGAGTGATGGTCTTC 2201241 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 2201242 CCAGTGAGGGTCTTGACAAAGATCTGCAT 2201270 Score = 111 bits (122), Expect = 1e-19 Identities = 147/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| ||| | |||||||| ||||| | ||| | | |||| || | ||| Sbjct 2201522 TGAAGGGTGGATTCCTTT-GAATATTGTAGTCGGCCAGAGTGCGGCCATCCTCGAGCTGC 2201580 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||||||||| || || || || ||||| || || || || || ||| Sbjct 2201581 TTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTT 2201640 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || || || | ||||| ||||| |||| || ||||| || Sbjct 2201641 GCCTTGACGTTGTCAATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTG 2201700 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 2201701 AGGGTCTTGACGAAGATCTGCAT 2201723 >seq167 Length=1102902 Score = 118 bits (130), Expect = 8e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || ||||| |||||||| || || |||||||||| || | | || || | ||| Sbjct 191373 ATGGAGAGTAGACTCTTTTTGGATGTTATAATCGGCGAGGGTGCGACCGTCCTCAAGTTG 191432 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||| || || |||||||| ||||| ||||||||||| || Sbjct 191433 CTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATACCTTCCTTATCTTGAATCTT 191492 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | ||||| || | || || || | |||| || |||||||| Sbjct 191493 GGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCGACCTCCAAGGTGATGGTCTTGCCGGT 191552 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || |||||||||||| Sbjct 191553 GAGGGTCTTGACGAATATCTGCATG 191577 >seq281 Length=803475 Score = 102 bits (112), Expect = 6e-17 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| || ||| | ||||||||||| |||| ||| || | || |||| |||| Sbjct 256024 TGGAGGGTAGACTCCTTTGG-ATATTGTAATCCGCGAGAGTCCT-CCGTCCTCCAGTTGC 255967 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| | ||| || || |||||||| || || ||||| || || || Sbjct 255966 TTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTC 255907 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| || | ||||| || || |||| ||| || || || Sbjct 255906 GCCTTCACGTTGTCAATAGTGTCCGAGCTCTCCACCTCGAGGGTGATCGTCTTACCCGTG 255847 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || || ||||| Sbjct 255846 AGAGTCTTCACGAAGATTTGCAT 255824 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || |||||||| |||||||||||||||| ||| | | | || || | ||| Sbjct 254929 TGGAGGGTGGACTCTTTTTGGATATTGTAATCGGCGAGAGTCCGGCCGTCCTCAAGCTGC 254870 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||| || || || || || ||||| || || || || || || Sbjct 254869 TTGCCGGCGAAGATAAGACGTTGCTGGTCCGGGGGTATGCCCTCCTTGTCCTGGATCTTG 254810 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || || |||| || |||||||| Sbjct 254809 GCCTTAACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 254750 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 254749 AGGGTCTTGACGAAGATCTGCAT 254727 >seq155 Length=1009872 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| ||||||| || | | |||| || | ||| Sbjct 940206 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTCCGGCCATCCTCGAGCTGC 940265 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||||| ||||| || || ||||| || || || || || || Sbjct 940266 TTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTG 940325 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||||| ||||| |||| || || || || Sbjct 940326 GCCTTGACGTTCTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTG 940385 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || ||||||||||| Sbjct 940386 AGGGTCTTCACGAAGATCTGCATGGT 940411 >seq3665 Length=65255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 101346 GCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAG 101405 |||| || || | || || ||||| ||||||||||| ||| || ||| | || | || Sbjct 60962 GCTGCTGGTCTAGAGGGATTCCTTCCTTATCTTGAATCTTTGCCTTAACATTATCAATAG 60903 Query 101406 TGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCT 101465 || |||| | ||||| || | ||||| ||| || || |||| |||||| ||||| |||| Sbjct 60902 TGCCAGAGCTCTCCACCTCCAAAGTGATCGTATTCCCTGTTAGAGTTTTGACAAAGATCT 60843 Query 101466 GCAT 101469 |||| Sbjct 60842 GCAT 60839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396149178071892