Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq297 120 2e-22 seq62 98.7 8e-16 seq1413 96.9 3e-15 seq782 82.4 6e-11 seq281 82.4 6e-11 >seq297 Length=752846 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||| ||||| || | ||| | ||| | || |||| |||||| |||||||| Sbjct 218349 TCTTTCTGAATGTTGTAGTCTGCAAGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAG 218290 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| ||||| | ||| | |||||||||||| ||||||| || ||| | Sbjct 218289 ATGAGGCGCTGCTGATCAGGGGGTATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATTA 218230 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||||| ||||| || || || || ||||| || ||| Sbjct 218229 TCAATGGTGTCAGAACTCTCCACCTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACA 218170 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 218169 AAGATCTGCAT 218159 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || | ||||| || || ||| ||||||||| || |||||||| | | Sbjct 217932 CCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCTGCT 217873 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || | |||||| || ||||||||||| ||||| ||||| | || Sbjct 217872 AATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGTGGG 217813 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || ||||||| ||| ||| | | | | ||||| ||| ||| Sbjct 217812 ATGCCCTCCTTATCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAACC 217753 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | || || | || |||||||| Sbjct 217752 TCAAGGGTGATAGTCTTCCCTGTAAGGGTCTTGATGAAGATCTGCAT 217706 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 48544 CCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGAC 48603 |||| ||||||| |||||| || || | | || || ||||| |||||||| | || Sbjct 218154 CCCTCAGCCGCATCACCAAGTGAAGGTAGAT-TCCTTCTGAATGTTGTAATCTGCCAGCG 218096 Query 48604 TTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGC 48663 | || | || || | ||||| || ||||| || || ||||| || || | ||| | Sbjct 218095 TGCGTCCATCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGATT-C 218037 Query 48664 CCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCA 48723 | |||||||| ||||||| || ||| | | | | || || ||||||||||| Sbjct 218036 CTTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCA 217977 Query 48724 CCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || |||| ||| || ||||| |||||||| Sbjct 217976 AAGTGATCGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 217934 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/225 (68%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 48543 CCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA 48602 |||||||| || | |||| || | || ||| ||||| || || || || | | Sbjct 217702 CCCCTTAGGCGGAGAACCAGGTGCAAGGTCGACTCCTTTTGGATGTTATAGTCTGCCAAG 217643 Query 48603 CTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACG 48662 | ||| | || ||||||||||| || ||||| ||||| ||||| ||||| | ||| | Sbjct 217642 GTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGATC- 217584 Query 48663 CCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCC 48722 ||||| ||||| |||||| ||| ||| | | | | ||||| ||| ||||| Sbjct 217583 CCCTCTTTGTCCTGAATCTTAGCTTTCACATTATCAATGGTGTCTGAGCTCTCAACCTCA 217524 Query 48723 ACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 | || || || || || || | || || ||||| ||||||||| Sbjct 217523 AGGGTGATTGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATC 217479 >seq62 Length=1642893 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| || | || || || ||||||||||||||||||||||| | Sbjct 1294488 CCACCCCTAAGCCTCAAAACGAGGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGCT 1294547 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || |||||||| || || ||||| |||| | || ||||| | ||| Sbjct 1294548 AGGGTTCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGGGGT 1294607 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 1294608 ATCCCCTCCTTGTC 1294621 >seq1413 Length=175152 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/134 (78%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || |||| ||| || || |||||||||||| |||||||||| | Sbjct 102859 CCACCCCTAAGCCTTAA-ACCAGATGCAGTGTTGACTCTTTTTGAATGTTGTAATCAGCT 102801 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || ||||||||||| || ||||| |||| || |||||||| | ||| Sbjct 102800 AG-GTTCGACCATCTTCCAACTGCTTTCCAGCAAA-ATCAATCTTTGTTGATCTG-GGGT 102744 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 102743 ATACCCTCCTTGTC 102730 >seq782 Length=366579 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 48544 CCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGAC 48603 |||| |||| || |||| ||| | || |||||||||||| |||||||||| | Sbjct 138091 CCCTAAGCCTTAAAACCAGATGCAATGTTGACTCTTTTTGAATGTTGTAATCAGCCAAGG 138032 Query 48604 TTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGC 48663 |||| | || |||||||| || || || || |||| || |||||||| | ||| | | Sbjct 138031 TTCGGCCATCTTCCAACTGTTTTCCAGCGAAAATCAATCTTTGTTGATCTGGGGGTATAC 137972 Query 48664 CCTCCTTGTC 48673 |||||||||| Sbjct 137971 CCTCCTTGTC 137962 >seq281 Length=803475 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||||||||| ||||||||||| | ||| | || |||| || | |||| Sbjct 254929 TGGAGGGTGGACTCTTTTTGGATATTGTAATCGGCGAGAGTCCGGCCGTCCTCAAGCTGC 254870 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || ||||| || || || || || || |||| ||| | |||||||||||| Sbjct 254869 TTGCCGGCGAAGATAAGACGTTGCTGGTCCGGGGGTATGCCCTCCTTGTC 254820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380813380534188