Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq518 131 2e-25 seq85 84.2 2e-11 >seq518 Length=568097 Score = 131 bits (144), Expect = 2e-25 Identities = 314/464 (68%), Gaps = 12/464 (3%) Strand=Plus/Minus Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTAT-TCGGTGGTTCA 163077 |||||||||| |||| || | || ||| | || | || ||||||| | | ||| Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT 409565 Query 163078 CTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAG 163137 | || |||||||| || ||||| | | || | | || | |||| ||||| ||| | Sbjct 409564 -TATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 409506 Query 163138 CAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT 163197 | ||||| || | ||||||| ||| | |||| || || ||| | || ||||| Sbjct 409505 AATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTA 409446 Query 163198 GCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGT 163257 | ||| ||||| || ||||| | || |||| || ||||| ||||||||| || || Sbjct 409445 GGTGCCCATGGTTA-TTTGGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGT 409387 Query 163258 TCACTTCAC--TTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 || ||| || || || | ||||| | | || || | |||| ||| ||||| | Sbjct 409386 TC-CTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTAC 409328 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACG 163375 || | |||||| | |||||||| || |||||||| | ||||||| | || ||| Sbjct 409327 GTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACA 409268 Query 163376 --CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAA-CAGAGCAGGACTTGGTA 163432 |||| || | || ||| | | | | | |||||| | || || | | | ||| || Sbjct 409267 ATCAGG--GTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGT-TTGATA 409211 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 163476 ||||||| ||| | || ||||||||||||||||||| || ||| Sbjct 409210 TGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 409167 >seq85 Length=1476802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 163006 TTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTA 163065 |||||| || ||||||||||| ||||| || || || ||| | || || || |||||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 163066 TTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTA 163108 ||||| || || || || ||||||||||| ||||| |||| || Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTA 645646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552899820788640