Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq2728 179 4e-40 seq916 91.5 2e-13 seq4860 84.2 2e-11 seq2774 84.2 2e-11 >seq2728 Length=129770 Score = 179 bits (198), Expect = 4e-40 Identities = 231/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 165190 TGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGG 165249 |||||| ||||||||||| | || || |||||||| |||| ||| ||||| || | Sbjct 96491 TGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTG 96550 Query 165250 CAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTG 165309 ||||||| || || ||| | | || || | |||||||||||||| |||||||||| Sbjct 96551 CAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTG 96610 Query 165310 CAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATT 165369 | |||||||| ||||| || ||||| || |||| ||||| || || | ||| | |||| Sbjct 96611 CTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATT 96670 Query 165370 TTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTC 165429 | || ||| | ||||| || || | | | | |||| || || | | | || | Sbjct 96671 TCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGTCGGCC 96730 Query 165430 TTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATC 165489 | ||||| ||||| |||||||| || ||||| || || || | ||||| ||||||| Sbjct 96731 TGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGATC 96790 Query 165490 CAGAATTTGAGACCTTCTA 165508 | ||||||||||| ||||| Sbjct 96791 CTGAATTTGAGACTTTCTA 96809 >seq916 Length=298367 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 164984 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTA 165043 ||| ||||| || || |||| || ||| |||||| |||| || || ||| | || || Sbjct 270285 TTATAATGCAATCGCATTCTTTGTTCCAATTGCTATTTT-GTTTCTGTATTCTTCATTTA 270343 Query 165044 CCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAG 165103 ||||||||||| || |||||||| || || || || || ||||| || ||| | Sbjct 270344 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTG 270398 Query 165104 ATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGG 165163 |||| | | ||| | ||||| || || || |||| | ||||| || ||| ||| || Sbjct 270399 ATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACTGG 270458 Query 165164 TGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGG 165208 ||||| || | || || || |||||| |||||||||| Sbjct 270459 AGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGG 270503 >seq4860 Length=43173 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 165425 TGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGA 165484 ||| || ||||| ||||| | |||||| || ||| | || || ||| | ||||| | Sbjct 9556 TGGCCTGGCTCTGAACCTCCATGCTTATGACTTCATTTTCCAAGAAATCCGTGCAGCGAA 9497 Query 165485 AGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCT 165523 |||||| ||||||||||| |||||||||||||| ||||| Sbjct 9496 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCT 9458 >seq2774 Length=74964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 165483 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGT 165542 ||||||| ||||||||||| ||||| |||||||| ||||| || || ||||| | | | Sbjct 26830 GAAGATCTTGAATTTGAGACTTTCTATACCAAAAATATCCTCTTAAACGAAGGTATTCAT 26889 Query 165543 GCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCC 165588 |||||| ||| || | | ||||| |||||||| |||| |||| Sbjct 26890 GCTTGGATGGTGGCTCCGAAGCAACCTCATGAAAATCTTATATTCC 26935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563021234549280