Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq195 150 3e-31 seq859 149 1e-30 >seq195 Length=1014778 Score = 150 bits (166), Expect = 3e-31 Identities = 552/852 (65%), Gaps = 27/852 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||||||||| || || ||||| || ||||| |||||||||| | ||| || ||| Sbjct 873939 CTGGTAGTCCCCGACCCTCTTCTCGAAAAAGTTCGTCTTCCCCTGGAGCGATATCAACTC 873880 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCCA 47954 ||| | ||| || |||| || |||| |||| || |||| | ||| Sbjct 873879 CATCCAATCGAACGGATTGGCTGCCCCGTACAACTTCCCG---CA--CCCAACGCCCCCA 873825 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 || ||||||| ||| |||||||||||| ||| | ||||| || | | Sbjct 873824 AGAGCCGATCCGCCACGAACTCGATGTATTCGCTCATCAAATCCCCATTCATCCCCACCA 873765 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | | ||| ||||| || | || |||||| |||| || | || || || | | | Sbjct 873764 GCGCCACCGGCAACGCGTCGCAGACGAACTCCCTCTCGATGTCGACAGCGTCGGCGATGA 873705 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | ||| | |||| ||| | | | |||| | ||| | || ||||| | ||||| Sbjct 873704 TTGACTTGATGCGGTCCTCAGGGAGCTTGTGGTTGAGGAG---GGAGTAGAGGAGGCAGG 873648 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| || || | Sbjct 873647 CGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCG 873588 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| || | || ||||||||||| || | ||| ||||| ||||||||||| | Sbjct 873587 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCC 873528 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATC 48313 |||| || || | ||| || ||| | ||| |||| || || | | || | ||| Sbjct 873527 CCTCAACAGCAGAGAAGGCCACGAGGCGCTCCGCGAAGGA---GTCCGAGGACTCA-ATC 873472 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || |||||||| | ||||||||| | || | |||||| | || || || Sbjct 873471 CACCGGAGCGCCCACTGGGCCTTCTTCGCCACCGCCGGGACCGTCTCGACAGCACGAAAA 873412 Query 48374 AGC-TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 || |||| || | | ||| | |||| |||| | |||||||| Sbjct 873411 GGCGGTCTT---TTCGTCAGGGTCTTTGATGTAGGATTCCAGCAAAAGAGAATACATCTC 873355 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | || || || || |||||||| ||||||||||| | ||||| | ||| Sbjct 873354 GGAGTGGATGTT-TCGATGGCTATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGCAATCTG 873296 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 || || | ||| | || ||||| ||| || || || || || || || Sbjct 873295 GACGTCGGACATGAAGCGGGTGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAA 873236 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT---TCCAGCC 48609 ||| |||||||| || | ||| |||||||||| | ||||||| | | |||| Sbjct 873235 GAA-GCAAGGACGTGGGAGATGAAGTGGCGCTCGTCGGGGGTGAGGGTGTGGAGCCAG-T 873178 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 | | ||| | ||||| || || || | ||||||||||| |||| || || || Sbjct 873177 GGGGAGGTCGGCGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCGACGGCCTTCTT 873118 Query 48670 GTACATGCCCCA 48681 |||||| |||| Sbjct 873117 GTACATCTCCCA 873106 >seq859 Length=348630 Score = 149 bits (164), Expect = 1e-30 Identities = 424/645 (66%), Gaps = 14/645 (2%) Strand=Plus/Minus Query 48041 AACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT 48100 |||||| |||| || | ||| || || | | ||| ||| | |||| ||| ||| | Sbjct 128527 AACTCCCTCTCAATGTCCACAGCGTCGGCGATGATCGACTTGATGCGGTCCTCCGAGAGC 128468 Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 ||| | ||| | || ||||| | |||||| ||||| | ||| | ||| ||||| Sbjct 128467 TTGCGGTTGAGGAG---GGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCG 128411 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 ||| ||||||| ||||||||||| ||| || ||||||| || | || ||||||||| Sbjct 128410 CGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCACGCTTCTTGAGCCAG 128351 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || | ||| ||||||||||||||||| ||||| || || || || || ||| Sbjct 128350 AAGATAGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGCGGCAAATGCAACGAGG 128291 Query 48281 CTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTC 48340 | ||| ||||||| || | || |||||| || ||||| | |||||||| Sbjct 128290 CGCTCGGCGAAAGACTCG--GAGGACT-CGATCCACCGGAGGGCCCATTGGGCCTTCTTT 128234 Query 48341 TTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC-TTCTTGCACTCACCTGCGTCCGC 48399 | | || | ||||| | ||| || || || |||| || | | ||| Sbjct 128233 GTCACCGCCGGGACGGTCTCGACGGCGCGAAAAGGCGATCTT---TTCGTCCGGATCCTT 128177 Query 48400 AACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTG 48459 | |||| ||| || | ||||||||| ||||| | ||||| || |||||||| Sbjct 128176 GATGTAGGATTCGAGGAGGAGGGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTG 128117 Query 48460 GAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAG 48519 ||| ||||||||||| | ||||| | ||| || || | ||| | | || Sbjct 128116 GAAGCCGTAGAAGGCGCGAGCCTCGGGGATCTGGACGTCGGACATGAAGCGGACGGCGAG 128057 Query 48520 ATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATG 48579 ||||| ||| || || || || || || |||||||| |||| || | || || Sbjct 128056 GTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGATGTGGGAGATAAAGTG 127997 Query 48580 GCGCTCGTTGTGGGTGAGAGCAT---TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTC 48636 |||||||| | |||||| | | |||| | | || || || || || || Sbjct 127996 GCGCTCGTCGGTGGTGAGGGTGTGGAGCCAG-TGGGGAGATCGCTGGAGAGATCGACCTC 127938 Query 48637 TTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCA 48681 || | ||||||||||| |||| || || |||||||| |||| Sbjct 127937 CTCGGCGGTCCAGAAGGAGGCGACGGCCTTCTTGTACATCTCCCA 127893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931221248855040