Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq859 145 1e-29 seq195 145 1e-29 >seq859 Length=348630 Score = 145 bits (160), Expect = 1e-29 Identities = 430/649 (66%), Gaps = 22/649 (3%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 |||||||||||||||||||| ||| |||||||||||| ||| | ||||| || Sbjct 127893 TGGGAGATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTCTCC 127952 Query 25540 AAGGACATGGACGGCTGGT---ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | || | | |||| || | || ||| ||||||| || ||| || || Sbjct 127953 AGCGATCTCCCCA-CTGGCTCCACACCCTCACCACCGACGAGCGCCACTTTATCTCCCAC 128011 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 | | || ||||| || ||||| || || || || |||||| || || | ||| Sbjct 128012 ATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCTTC 128071 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | || || ||| | ||||| |||||||| |||||||| |||||||| Sbjct 128072 ATGTCCGACGTCCAGATCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAG 128131 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 || | ||||| ||| |||| || || || | ||||| | || | ||| Sbjct 128132 AACATCCACTCCGAGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCGGACGAA 128191 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCGGTG 25835 | |||||| || ||| | ||| ||||| | | ||| || | | | |||||| | || Sbjct 128192 A-AGATCGCCT-TTTCGCGCCGTCGAGACCGT-CCCGGCGGTGACAAAGAAGGCCCAATG 128248 Query 25836 GGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 |||| | ||||||| | | | ||| | || | |||||| || || || |||| Sbjct 128249 GGCCCTCCGGTGGATCGAGTCCTCCGAGT----CTTTCGCCGAGCGCCTCGTTGCATTTG 128304 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAG 25953 | || || ||||| ||||| ||| || || || ||| | ||||||||||||||| || Sbjct 128305 CCGCCGTTGAGGGGATCTTCTTCTCTGGCTCCTTCTGCT-CTATCTTCTGGCTCAAGAAG 128363 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| ||||| ||| ||||||||||||||| | | |||||||| ||| Sbjct 128364 CGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTC 128423 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 ||| | || || |||||||| |||||| | || | | || ||| | |||| | Sbjct 128424 CACTGCGACTTCGCCTGCCTCCTCTACTC---CCTCCTCAACCGCAAGC--TCTCGGAGG 128478 Query 26074 ACCGTCTACAGT--ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 |||| | ||| |||||| || |||||||| || |||| |||||| Sbjct 128479 ACCGCATCAAGTCGATCATCGCCGACGCTGTGGACATTGAGAGGGAGTT 128527 >seq195 Length=1014778 Score = 145 bits (160), Expect = 1e-29 Identities = 302/437 (69%), Gaps = 21/437 (5%) Strand=Plus/Plus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| |||||||| |||||||||| | ||||| ||| ||||| | ||| || Sbjct 873317 TTCTACGGCTTCCAGATAGCCATCGAAACA-TCCACTCCGAGATGTATTCT---CTTTTG 873372 Query 25750 ATGA---CGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC 25806 || | ||||| | |||| | ||| | ||| || || ||| |||| ||||| || Sbjct 873373 CTGGAATCCTACATCAAAGACCCTGACGAAA-AGACCGCCT-TTTCGTGCTGTCGAG-AC 873429 Query 25807 ATACCCAGCA-TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC 25865 ||| || | || |||||| | |||||| | |||||| | | | | | Sbjct 873430 GGTCCCGGCGGTGGCGAAGAAGGCCCAGTGGGCGCTCCGGTGGATTGA--GTCCTCGGAC 873487 Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 | | || | ||||| || || ||||| ||||||| ||||| ||||| ||| ||| || Sbjct 873488 TCC-TTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTC 873546 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAA 25985 || ||||||||||||||||| || || |||||| |||||| ||| ||||| Sbjct 873547 CTTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAA 873606 Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGG 26045 |||||||||| | | |||||||| |||||| | || || |||||||| |||||| | Sbjct 873607 CGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTC--- 873663 Query 26046 CCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGT--ATCATCAAAGAGGCTGTG 26103 || | | |||||| | || | ||||| | ||| |||||| || ||||| Sbjct 873664 CCTCCTCAACCACAAGC--TCCCTGAGGACCGCATCAAGTCAATCATCGCCGACGCTGTC 873721 Query 26104 GAGATCGAGAAGGAGTT 26120 || ||||||| |||||| Sbjct 873722 GACATCGAGAGGGAGTT 873738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928534147856640