Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq2728 188 7e-43 seq916 132 5e-26 seq291 96.9 4e-15 seq242 93.3 4e-14 seq16 86.0 6e-12 seq2774 82.4 8e-11 >seq2728 Length=129770 Score = 188 bits (208), Expect = 7e-43 Identities = 238/325 (73%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 10394 GCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATC--AAGATGGCG 10451 || || |||| || || || || | || |||||||| || ||||| ||||||| | Sbjct 96487 GCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC--TTTATTCGAAGATGGTG 96544 Query 10452 AACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGG 10511 | ||||| || ||| |||||| | ||||||| |||||||| ||||| |||| Sbjct 96545 ACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGG 96604 Query 10512 TTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGC 10571 | ||||||||||| || |||||||| || ||||| |||||||| ||||||| | ||| Sbjct 96605 TCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGT 96664 Query 10572 TTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCA 10631 | |||||||||||||| |||||||| || | | | | |||| | || || | | Sbjct 96665 TACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAG 96724 Query 10632 TTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAG 10691 | || || ||||| || || |||||||| || || || || ||||| || | || | | Sbjct 96725 TCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGG 96784 Query 10692 AAGATCCTGAATTTGAGACGTTCTA 10716 ||||||||||||||||||| ||||| Sbjct 96785 AAGATCCTGAATTTGAGACTTTCTA 96809 >seq916 Length=298367 Score = 132 bits (146), Expect = 5e-26 Identities = 197/278 (71%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 10103 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTT 10162 ||||||||||| || |||||||| | ||| ||| || |||| ||||| | || Sbjct 270196 TGGGCTTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTC 270255 Query 10163 GAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATT 10222 || | || |||| | | | ||| ||| ||||| ||||| || | || || ||| Sbjct 270256 GAACCTGCTTGATTTGTGCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCCAATT 270315 Query 10223 GCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCG 10282 ||| |||| || ||| ||| |||| |||||||| || || ||||||||||||||||| Sbjct 270316 GCTATTTT-GTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCA 270374 Query 10283 CCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAAT 10342 || | || || || || || || | ||| | |||||| |||| || ||||||||| Sbjct 270375 CCCA-----GGTGTTGCAGCTATATTTTGATTCATCCTCTTCTTCCAAGGGTTTCATAAT 270429 Query 10343 TGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGG 10380 |||| | | || || || ||| ||| |||||||| || Sbjct 270430 TGGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGG 270467 >seq291 Length=752601 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 10265 TCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTC 10324 ||| |||||||||||||||| | ||| ||| || || || || || ||| | |||||| Sbjct 473236 TCTGGTTGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCTTC 473177 Query 10325 CTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGG 10380 |||| || ||||||||||||| | | || || || |||||||||||| ||| ||| Sbjct 473176 TTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGG 473121 >seq242 Length=908417 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 8479 TACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAG 8538 |||| || |||||||| | | ||||||||||| | ||||| || |||||| || Sbjct 334998 TACCTAATATGGGAAGCGTGATATATTGATGAGTGGTTATACAATGGCA-TCCTTATGAG 334940 Query 8539 CTTGTAGTTTTCCACTTCCTCCTTGGCGT--CTTTGCTTATATGGGTCGTGAATGGGAAC 8596 || | ||| | |||||| | |||| | ||| | || ||||||||||| |||||| Sbjct 334939 CTAATTGTTCTACACTTCTTACTTGATCTAGCTTGG--TACATGGGTCGTGAGTGGGAAG 334882 Query 8597 TTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCG 8656 || || |||| | || ||| ||| || ||||||||| || ||||||||| || Sbjct 334881 TTAGTTTTTGCCTATGTATATGTCTTTGAATTGTTGTTGCATATTCAGCTCCTGTTACCA 334822 Query 8657 CTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGG 8690 ||| | || ||| ||| | ||||| ||| |||| Sbjct 334821 CTGTTGCTATTGTTTTCTTGGTCTACCCTATTGG 334788 >seq16 Length=2636605 Score = 86.0 bits (94), Expect = 6e-12 Identities = 171/252 (68%), Gaps = 11/252 (4%) Strand=Plus/Minus Query 8453 GCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGT 8512 |||||| || ||||| | || ||| |||| | |||||||| || ||| ||||||||| Sbjct 307787 GCTCTA--GCCATTGGTTTGCATTTCCACCCAACATGGGAAGCAGCATCTATTGATGAGT 307730 Query 8513 GGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTG 8572 || | || || || ||||| || |||| | ||| | || ||| | || | || | Sbjct 307729 GGTTATATAATGGCGGTCCATATGAGCTAATTGTTCTACATTTCTTATTTCGTGTAGCTT 307670 Query 8573 CTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTG 8632 ||| ||| || | | ||||||| || | | || |||| ||||||||| | Sbjct 307669 GTTACATGAATCATAAGCAGGAACTTAGTTTCTATC-AGGTATGCATCCTTGGATTGCTA 307611 Query 8633 TTG--------CATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCC 8684 ||| |||| || |||||| |||| |||||| |||| | ||| | ||||||| Sbjct 307610 TTGCATATTGCCATATTCGGCTCCTATTGCAGCTGCTATTGCTATTTTCTTGATCTATCC 307551 Query 8685 TTTTGGTCAAGG 8696 | || ||||||| Sbjct 307550 TATTAGTCAAGG 307539 >seq2774 Length=74964 Score = 82.4 bits (90), Expect = 8e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 10691 GAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGT 10750 ||||||| |||||||||||| |||||||| || |||||||| | ||||||||| ||| | Sbjct 26830 GAAGATCTTGAATTTGAGACTTTCTATACCAAAAATATCCTCTTAAACGAAGGTATTCAT 26889 Query 10751 GCATGGATGG 10760 || ||||||| Sbjct 26890 GCTTGGATGG 26899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516307263264000