Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq2728 196 5e-45 seq518 168 7e-37 seq2163 111 2e-19 >seq2728 Length=129770 Score = 196 bits (216), Expect = 5e-45 Identities = 239/326 (73%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 162700 TGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAG 162759 |||| | ||||||||||| | || || |||||||| | | ||||||||| || | Sbjct 96491 TGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTG 96550 Query 162760 CAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTG 162819 |||| || || || ||| || | || || | ||||| || ||||| ||||| |||| Sbjct 96551 CAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTG 96610 Query 162820 CGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATT 162879 | |||||||| ||||| || || || || |||||||| || || ||||||| |||| Sbjct 96611 CTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATT 96670 Query 162880 TCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGAC 162939 |||||||||| ||||| || || | | | | |||| ||| || | | | | || | Sbjct 96671 TCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGTCGGCC 96730 Query 162940 TCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACC 162999 | ||||| || || |||||||| ||||| || || |||||| ||||||| || ||||| | Sbjct 96731 TGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGATC 96790 Query 163000 CTGAGTTTGAGACGTTCTATACAAAG 163025 |||| |||||||| ||||| ||||| Sbjct 96791 CTGAATTTGAGACTTTCTAATCAAAG 96816 >seq518 Length=568097 Score = 168 bits (186), Expect = 7e-37 Identities = 412/622 (66%), Gaps = 32/622 (5%) Strand=Plus/Minus Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293 ||||||| |||| || ||||||| || ||||| || ||||||| || || || | || Sbjct 409758 GTCTGGGCATGCATCTTTGGATTGTTGTTGCATATTCAACTCCTGTTGCAGCTGCTACTG 409699 Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353 | | ||| || ||| ||| | |||||||| |||||||||| |||||| Sbjct 409698 CTAT-TTCTTGACCTACCCTATTGGTCAAGGAAGTTTCTCTGAT---ATGCCT------- 409650 Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACC 161413 | ||| || ||| || || || ||||||| ||| |||| | Sbjct 409649 ------------TGAACAAC-----TGTATTTTAAATGGATTACAACATCCTCGTGCATC 409607 Query 161414 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGG-TTCTCTGTTCAGTGCAATGCAC 161472 | | || ||| | || | ||| ||||| | | || |||| | |||||||| || || Sbjct 409606 CATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT-TATTCAGTGCTATCCAT 409548 Query 161473 GGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTAT 161532 ||||| ||| |||| | | || | |||||||| |||| ||||| || | Sbjct 409547 GGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAAATGAGTCTACTAATGAA 409488 Query 161533 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTC 161592 ||||| | ||| |||||| || || || | || || || | |||||| || || || Sbjct 409487 GGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAGGTGCCCATGGTTATTTG 409428 Query 161593 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTG-CACTTCTTCCT 161651 | | || | || ||||| ||| |||||||| || | || | || || || | Sbjct 409427 GCAGATTTG-TCTTACAATATGCTAGTTTCAACAATTCTTGTTCCTTAACATTTATTTTT 409369 Query 161652 TGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATT 161711 |||||||||| || || || |||| ||| ||||| | | | || || ||| | || Sbjct 409368 GGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACGTATCAGTACTATGACTTT 409309 Query 161712 CAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAA 161771 |||||| ||||||||||| | |||||| ||| || || | ||||||| | ||||| | Sbjct 409308 CAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAATCAGGGTTATGTTATTAC 409249 Query 161772 CACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAA 161831 || || | | || | |||| | || | ||| |||||||| ||| | || | || Sbjct 409248 CATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGAAGTAATGTATGAATGTAA 409189 Query 161832 TGCTCACAACTTCCCTCTTGAC 161853 |||||||||||||||||| ||| Sbjct 409188 TGCTCACAACTTCCCTCTAGAC 409167 >seq2163 Length=162151 Score = 111 bits (122), Expect = 2e-19 Identities = 134/179 (75%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 162143 AAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCT 162202 ||| ||||||||| ||||||| ||||||||||| || | || ||||| ||||||| | Sbjct 135421 AAGGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTTCCTTATGCTTATTT 135362 Query 162203 TGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACT 162262 ||| | || |||||| ||| || | ||||| || || |||||||| || ||| | Sbjct 135361 CGCTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGGTATACCCATGGATT 135302 Query 162263 TGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGC 162319 || ||||||||| | | ||| ||||| |||||| || || | |||||| ||||| || Sbjct 135301 GGCCAGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGTAGTTTCCACTCCTGC 135245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547564005948960