Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq518 93.3 1e-14 >seq518 Length=568097 Score = 93.3 bits (102), Expect = 1e-14 Identities = 413/638 (65%), Gaps = 46/638 (7%) Strand=Plus/Plus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 || |||| ||||| |||||||| |||||||||| || | ||| ||||| | ||| Sbjct 409159 GATGCTATGTCTAGAGGGAAGTTGTGAGCATTACATTCATACATTACTTCCATATCAAAC 409218 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||| | |||| | |||| | | | | | || | || | ||||| | Sbjct 409219 TTACCATGATTGATGATATCAGTCTAGATGGTAATAACATAACCCTGATTGTCTACATTA 409278 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 | ||||||| | ||||| ||||| || || |||| |||||| ||| | | || || Sbjct 409279 GTTTGGTTGGAATTGAAACCATTTAGGTTGAAAGTCATAGTACTGATACGTAAAGCAGTT 409338 Query 18012 AGCCATATGCA-AGTGACGGGCCAAGCAGCCAAGAAGAAATGT--AGACTCCTGCTATTG 18068 | | | || | | || | ||||||||||||| || |||||| || | | |||| Sbjct 409339 AACTAGATACCTACTG-CAAGCCAAGCAGCCAAAAATAAATGTTAAGGAACAAG-AATTG 409396 Query 18069 TTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTA 18128 || || |||||||| || |||| | ||| ||||| || ||||| || | ||||||||| Sbjct 409397 TTGAAACTAGCATATTGTAAGACAAATCTGCCAAA-TAACCATGGGCACCTACAATATTA 409455 Query 18129 TACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTT 18188 | || || || |||| | ||| |||| || | || ||||||| | ||| ||| Sbjct 409456 TGAGTTTCGTCCACTTGACTGAATCTATAACCTTCATTAGTAGACTCATTTTTAGTGGTT 409515 Query 18189 TCTCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATA--AAGCTC 18243 || | || |||| ||| | |||| || || |||||| ||||| ||| | Sbjct 409516 TCCTTGATCAAAGTATAGG--TTGCCAAG-GAACCATGGATAGCACTGAATAAGAAGTT- 409571 Query 18244 CACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGG 18303 | |||| || || |||| | ||| || | ||||||| ||||| |||| Sbjct 409572 -GCTATATACACCGGCTCCACCCAACATGTGAGATGGATGCACGAGGATGTTGT------ 409624 Query 18304 CTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGA 18363 ||| | ||| ||| ||| | | | || |||||| |||||||| Sbjct 409625 -----AATCC---------ATTTAAAATACAGTTGTT--CA--AGGCAT---ATCAGAGA 409663 Query 18364 AACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCG 18422 |||| ||||| |||| ||| || | ||||||| || | |||||||| || || | Sbjct 409664 AACTTCCTTGACCAATAGGGTAGGTCAAGAAATA-GCAGTA-GCAGCTGCAACAGGAGTT 409721 Query 18423 GAATAAGCAACACAAATCCACGGGCGCATACCTAGTCT 18460 ||||| |||||| |||||| | |||| || || || Sbjct 409722 GAATATGCAACAACAATCCAAAGATGCATGCCCAGACT 409759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151270321983064