Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq2728 197 2e-45 seq916 132 6e-26 seq291 91.5 2e-13 seq85 87.8 2e-12 seq4860 84.2 3e-11 seq27 84.2 3e-11 >seq2728 Length=129770 Score = 197 bits (218), Expect = 2e-45 Identities = 244/331 (74%), Gaps = 2/331 (1%) Strand=Plus/Minus Query 101814 CTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAA 101873 ||||| ||||| ||||| || || |||||||| ||||| | || |||||||| || || Sbjct 96816 CTTTGATTAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGAATTTCTTGGGAAACGAA 96757 Query 101874 GTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATG-GAACTTGTCCACAGAC 101932 |||||||||||| ||||| ||||| || || | | |||| | | ||| |||| | | Sbjct 96756 GTCATAAGCACGGAGGTTCAGAGCCAGGCCGACTAC-CCGAAGAGCACTCATCCATAAAT 96698 Query 101933 CCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATAC 101992 | | || || ||||| |||||||||||||| ||||| | ||||| ||| |||| | Sbjct 96697 CGGTTACTGGTACAAATAGCATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACCC 96638 Query 101993 CAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTG 102052 |||||||||| ||||| || ||||| || || |||||||||||||||||||| |||| | Sbjct 96637 CAAAGATTTGGGACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTCTCTTCGGCTTGAG 96578 Query 102053 TGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCA 102112 | | | || || ||| || ||||| ||||||||||| | | ||| || || | Sbjct 96577 TTGGGTTAAAAGCACGGAATGTATTTGCACCGTCACCATCTTCGAATAAAGTATTTTCTA 96518 Query 102113 CAGTGACACCGTGGATTGCTGACAGCAGTGC 102143 | || |||| || || || | ||||| || Sbjct 96517 CGGTAGCACCATGAATAGCGCATAGCAGAGC 96487 >seq916 Length=298367 Score = 132 bits (146), Expect = 6e-26 Identities = 199/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 102157 CCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAG 102216 || ||||| || ||| ||| |||||||| | | |||| ||||| || || || | |||| Sbjct 270467 CCGGCAACTCCAGTCAAATGAAATGGGTTCAACATCCAATTATGAAACCCTTGGAAGAAG 270408 Query 102217 AGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGT 102276 || | ||||| |||||| ||||||||||| ||| |||||||||||||| || || Sbjct 270407 AGGATGAATCAAAATATAGCTGCAACACC-----TGGGTGCAAAGAACCAACTAGATTGA 270353 Query 102277 CCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATA 102336 || || ||||| |||| || ||| || |||| ||| || || || |||| || || Sbjct 270352 CCCAGTGGATAAATGAAGAATACAGAAAC-AAAATAGCAATTGGAACAAAGAATGCGATT 270294 Query 102337 GCATTGTACGGAC-GAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACC 102395 ||||| || | | |||| | | || | ||| ||||||| ||| | | ||||| Sbjct 270293 GCATTATAAAGTCACAATTGC-ACAAATCAAGCAGGTTCGAATTAACGTAATGTAAAACC 270235 Query 102396 AATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCA 102434 | || || ||||||||||||| ||||||||||| Sbjct 270234 TGTTAGTCTGAAAACACCGTGGAGAGCAACAAAAGCCCA 270196 >seq291 Length=752601 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 102166 CCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAAT 102225 ||||||||||| |||||||| | | |||| ||||| || || || | |||||| | |||| Sbjct 473130 CCCATCATATGAAATGGGTTCAACATCCAATTATGAAACCCTTGGAAGAAGAGGATGAAT 473189 Query 102226 CTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAAC 102268 | |||||| ||||| || ||| ||||||||||||||||| Sbjct 473190 CGAAATATAGCTGCTACGTTAAAATTGGGCGCAAAGAACCAAC 473232 >seq85 Length=1476802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 103548 TAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCA 103607 || |||| ||||| |||||||||||||| || || || ||||| || ||||| || |||| Sbjct 645646 TACCAAG-GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCCA 645588 Query 103608 GCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAA 103650 |||||| || || ||||| || ||||| ||||| |||||| Sbjct 645587 ACATGTGAAATGGATGCATAAGGATGTTGTGTTCCATTTGGAA 645545 >seq4860 Length=43173 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 101806 AGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGG 101865 ||||| || || |||||||| ||||| || || ||||||| ||||| | ||| |||||| Sbjct 9458 AGGATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTTCGCTGCACGGATTTCTTGG 9517 Query 101866 GATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCA 101904 | | |||||||||||| | ||||| ||||| || ||| Sbjct 9518 AAAATGAAGTCATAAGCATGGAGGTTCAGAGCCAGGCCA 9556 >seq27 Length=2012675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 103418 GCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCT 103477 || |||||||||||||| || || || |||| |||||| |||||||| || || || ||| Sbjct 1262208 GCATATTGGAAGATCAATCGGCCAAAATAAC-ATGAGCAGCTACGATATTATAAGTTTCT 1262150 Query 103478 TCCTCTTGTCCGAACTTGTAACC 103500 |||||||| ||||| ||||||| Sbjct 1262149 TCCTCTTGACCGAATCTGTAACC 1262127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633301721376480