Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq518 125 2e-24 seq27 89.7 2e-13 >seq518 Length=568097 Score = 125 bits (138), Expect = 2e-24 Identities = 313/470 (67%), Gaps = 8/470 (2%) Strand=Plus/Plus Query 21468 GATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGG 21527 ||||| | ||| || ||||||||||| || || | |||| ||| || || | ||| Sbjct 409159 GATGCTATGTCTAGAGGGAAGTTGTGAGCATTACATTCATACATTACTTCCATATCAAAC 409218 Query 21528 TTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGA 21587 || || | || | || |||| | || || | || || | || | | ||| | Sbjct 409219 TTACCATGATTGATGATATCAGTCTAGATGGTAATAACATAACCCTGATTGTCTACATTA 409278 Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAG 21645 | |||||| | ||||||||||| | |||||||| ||| ||| || ||| || |||| Sbjct 409279 GTTTGGTTGGAATTGAAACCATTTAGGTTGAAAGTCATAGTACTGATACGTAAA--GCAG 409336 Query 21646 CAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATG--AAGACTACGGGAATT 21703 ||| | |||||||| || |||| ||||| | ||| ||||| ||| || ||||| Sbjct 409337 TTAACTAGATACCTACTGCAAGCCAAGCAGCCAAAAATAAATGTTAAG-GAACAAGAATT 409395 Query 21704 ATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATT 21763 || || ||||||||||| |||| || | || ||||| || || ||| | |||||||| Sbjct 409396 GTTGAAACTAGCATATTGTAAGACAAATCTGCC-AAATAACCATGGGCACCTACAATATT 409454 Query 21764 GTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGT 21823 | ||| || ||| |||||| || | ||||| | || || | | || ||| || Sbjct 409455 ATGAGTTTCGTCCACTTGACTGAATCTATAACCTTCATTAGTAGACTCATTTTTAGTGGT 409514 Query 21824 CTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACC 21883 || || | | | || ||| | ||| || |||||| ||| || | Sbjct 409515 TTCCTTGATCAAAGTATAGGTTGCCAAGGAACCATGGATAGCACTGAATAAGAAGTTGCT 409574 Query 21884 AAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGT 21933 | |||| ||||| |||||| ||||||| | ||||||| || || |||| Sbjct 409575 ATATACACCGGCTCCACCCAACATGTGAGATGGATGCACGAGGATGTTGT 409624 >seq27 Length=2012675 Score = 89.7 bits (98), Expect = 2e-13 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| | |||||||| || ||||| ||||| Sbjct 1262211 CTAGCATATTGGAAGATCAATCGGCCAAAATAACA-TGAGCAGCTACGATATTATAAGTT 1262153 Query 21771 TCTTCCTCTTGACCAAACTTGTAACC 21796 |||||||||||||| || ||||||| Sbjct 1262152 TCTTCCTCTTGACCGAATCTGTAACC 1262127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146161545697680