Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2728 91.5 2e-13 seq2163 82.4 9e-11 seq916 82.4 9e-11 >seq2728 Length=129770 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 122981 TAGAAAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTAT 123040 ||||||||||| || || || ||||| ||||| | || ||||| || || ||||| || Sbjct 96809 TAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGAATTTCTTGGGAAACGAAGTCATAA 96750 Query 123041 GCTCTGAGGTTAAGTGCTAGACCTACGATACCTATAGATGA--TGTCCACATACCCATGA 123098 || | |||||| || || || || || |||| ||| | |||| | | | | | Sbjct 96749 GCACGGAGGTTCAGAGCCAGGCCGAC--TACCCGAAGAGCACTCATCCATAAATCGGTTA 96692 Query 123099 CAGGAACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATA 123158 | || || || | ||||| ||| ||||| | | ||| || ||||| || | ||||| | Sbjct 96691 CTGGTACAAATAGCATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACCCCAAAGA 96632 Query 123159 TCTGTGACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTC 123204 | || ||||| || | ||| || || | ||| |||||| ||||| Sbjct 96631 TTTGGGACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTCTCTTC 96586 >seq2163 Length=162151 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 123702 CAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATAC 123761 |||| ||||| ||| | || || ||||| || || || | ||| ||| || | | Sbjct 135246 CAGGAGTGGAAACTACAGCGGTCAAGAAATTGCAACCTTCCAAATAGGAACTGGCCAATC 135305 Query 123762 CATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGAT 123821 |||| ||||||||||| || || || || | |||| |||||||| || | | | || Sbjct 135306 CATGGGTATACCATGAAGTTACAAAAGTTATACCTATAAACCAACCTCCTAAAGCGAAAT 135365 Query 123822 ACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTA 123881 | ||| |||| | ||||| || |||||||| |||| || | ||||| || || || Sbjct 135366 AAGCATAAGGAAAGAGTAATAGGCCAGACCAGCCTACAAAAATGAAACGGTCCCTTCATA 135425 Query 123882 ACCAGTCGTC 123891 |||| || || Sbjct 135426 ACCAATCATC 135435 >seq916 Length=298367 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/173 (71%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 123299 GCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACACCCATCATGTGA 123358 ||||||||||| | ||||| | || ||||| || ||| ||||| || ||| ||| Sbjct 270506 GCACCATGAATAGTGCATAGCAGAGCAGTACCTAATACTCCGGCAACTCCAGTCAAATGA 270447 Query 123359 AATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAACGAAAGATTGCT 123418 ||||| ||||| | || || || ||||| | ||| | ||| | | ||| || ||| Sbjct 270446 AATGGGTTCAACATCCAATTATGAAACCCTTGGAAGAAGAGGATGAATCAAAATATAGCT 270387 Query 123419 GCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGGATAGAT 123471 || ||||| || ||||| ||||||||||| ||||| |||||||| || Sbjct 270386 GCAACACC---TG--GGTGCAAAGAACCAACTAGATTGACCCAGTGGATAAAT 270339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578804753985120