Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2728 156 6e-33 seq916 140 4e-28 seq291 91.5 2e-13 >seq2728 Length=129770 Score = 156 bits (172), Expect = 6e-33 Identities = 221/311 (71%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 23502 TAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAA 23561 ||||| |||||| | | |||||| || |||||||| ||||| || || |||||| Sbjct 96809 TAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGAATTTCTTGGGAAACGAAGTCATAA 96750 Query 23562 GCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACA 23621 ||||| || || ||||| || || | | | || || | | ||| | | | | || Sbjct 96749 GCACGGAGGTTCAGAGCCAGGCCGACTACCCGAAGAGCACTCATCCATAAATCGGTTACT 96690 Query 23622 GGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATT 23681 || ||||| | ||||||||| || ||||||| |||||| ||| |||||||| |||||| Sbjct 96689 GGTACAAATAGCATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACCCCAAAGATT 96630 Query 23682 TGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCG 23741 || |||||||| || || || || ||||| ||||| ||||| || | ||||| | | Sbjct 96629 TGGGACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTCTCTTCGGCTTGAGTTGGGTTA 96570 Query 23742 AACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACT 23801 || || || || ||||| || |||||||| | | ||||| || || ||| | Sbjct 96569 AAAGCACGGAATGTATTTGCACCGTCACCATCTTCGAATAAAGTATTTTCTACGGTAGCA 96510 Query 23802 CCATGAATAGC 23812 ||||||||||| Sbjct 96509 CCATGAATAGC 96499 >seq916 Length=298367 Score = 140 bits (154), Expect = 4e-28 Identities = 220/314 (70%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 23802 CCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAG 23861 |||||||||| | || || || || | || || |||||||| ||| ||| || Sbjct 270503 CCATGAATAGTGCATAGCAGAGCAGTACCTAATACTCCGGCAACTCCAGTCAAATGAAAT 270444 Query 23862 GGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCA 23921 ||||| | | |||| |||||||| || |||| |||||| | ||| | || || || ||| Sbjct 270443 GGGTTCAACATCCAATTATGAAACCCTTGGAAGAAGAGGATGAATCAAAATATAGCTGCA 270384 Query 23922 ACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACA 23981 ||||| | || |||||||||||| || || |||| ||||| |||| ||||||| Sbjct 270383 ACACC-----TGGGTGCAAAGAACCAACTAGATTGACCCAGTGGATAAATGAAGAATACA 270329 Query 23982 GACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATT 24041 || || || | |||||| ||| || | || || || ||||| || | | | | | Sbjct 270328 GAAACAAA-ATAGCAATTGGAACAAAGAATGCGATTGCATTATAAAGTCACAATTGCACA 270270 Query 24042 AGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGA 24101 | | || |||| || | |||||| |||||||| | ||| || ||||||||||| Sbjct 270269 AATCAAGCAGGTTCGAATTAACGTAATGTAAAACCTGTTAGTCTGAAAACACCGTGGAGA 270210 Query 24102 GCAACAAAGGACCA 24115 |||||||| | ||| Sbjct 270209 GCAACAAAAGCCCA 270196 >seq291 Length=752601 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 23796 GTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATA 23855 ||| | ||||||||||| | || || | | || | || ||| ||| |||||||||| Sbjct 473079 GTAGCACCATGAATAGCGCATAGCAGAGTAGCACCTAATACTCCAACAATTCCCATCATA 473138 Query 23856 TGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATC 23915 || || ||||| | | |||| |||||||| || |||| |||||| | ||| | || || Sbjct 473139 TGAAATGGGTTCAACATCCAATTATGAAACCCTTGGAAGAAGAGGATGAATCGAAATATA 473198 Query 23916 GCCGCAACACCGAAACTCGGCGCAAAGAACCAA 23948 || || || ||| | ||||||||||||||| Sbjct 473199 GCTGCTACGTTAAAATTGGGCGCAAAGAACCAA 473231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665271825397920