Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq859 122 1e-22 seq199 122 1e-22 seq29 122 1e-22 seq195 105 8e-18 seq52 98.7 1e-15 seq3 89.7 6e-13 >seq859 Length=348630 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || |||||||||||||| |||| ||||| || ||||| ||||||||||| || || Sbjct 128277 TCTTTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCC 128336 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||| |||| | ||| | |||||||| ||||||||||| || || |||||| || Sbjct 128337 TTCTGCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAAC 128396 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || ||||| || ||||| |||||| Sbjct 128397 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 128426 >seq199 Length=986226 Score = 122 bits (134), Expect = 1e-22 Identities = 232/336 (69%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || || || | || ||| || || || |||||| || ||| ||||| Sbjct 367889 CCAGGAACTGGGAAAACATTGCTTGCCAAGGCAATTGCTGGTGAAGCAGGTGTTCCATTT 367830 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | |||| | | | ||||| ||||||||||||||||| ||||| | | || Sbjct 367829 TTCTCAATT-TCTGGCTCTGAGTTTGTAGAGATGTTTGTTGGTGTAGGTGCTTCACGAGT 367771 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||||| ||| | | ||| || ||| || || || | || | |||||||| Sbjct 367770 CCGTGATCTTTTTAAGAAGGCCAAAGAGAATGCGCCTTGCATCATTTTG-TGGATGAGAT 367712 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| || || | |||| | | | || | | | | | ||||| ||||||||| Sbjct 367711 TGATGCTGTTGGAAGGCAAAGAGGAACAGGAATTGGAGGTGGG--AATGATGAGAGAGAA 367654 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 ||||| ||||||| || | || ||||||||||| ||||| | ||||| || | Sbjct 367653 CAAACTCTTAATCAGCTGTTGACTGAGATGGATGGGTTTGAAGGAAATACTGGAATAATT 367594 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 || ||||| ||||| ||||| | |||||||| ||| Sbjct 367593 GTAATTGCAGCCACCAATCGTGCAGATATCCTAGAT 367558 >seq29 Length=2149955 Score = 122 bits (134), Expect = 1e-22 Identities = 323/489 (66%), Gaps = 7/489 (1%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| || | || | |||||| | || || ||| | ||||| ||| | || Sbjct 523850 TGATGTTGCTGGAGTAGATGAAGCCAAACAGGATTTTATGGAGGTGGTGGAGTTTTTGAA 523791 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | |||| || |||| | || | ||||| || || ||| | ||||| | || Sbjct 523790 GAAACCTGAAAGATTTACTGCAGTAGGTGCTCGTATTCCTAAAGGTGTTCTTCTTGTTGG 523731 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | || || || || ||||| | || || || || || || ||| || ||| || Sbjct 523730 TCCTCCGGGAACTGGGAAGACTTTGCTTGCTAAGGCAATTGCAGGAGAAGCAGGTGTTCC 523671 Query 175371 ATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 ||| || || | || | | | ||||| |||||||||||||| || ||||| | Sbjct 523670 ATTTTTCTCAATT-TCAGGGTCGGAGTTTGTAGAGATGTTTGTTGGAGTTGGTGCTTCAC 523612 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | ||||| ||||| || | | ||| || ||| ||||| ||||| || |||||| Sbjct 523611 GAGTTCGTGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCATGCATTGTGTTTGTTGATG 523552 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCA--AATGACGAGAG 175547 | |||||||| || || | |||| | | | ||| || || | ||||| || || Sbjct 523551 AAATTGATGCTGTTGGAAGGCAAAGAGGAACAGGT---ATTGGAGGAGGAATGATGAAAG 523495 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCAT 175607 ||||||||| ||||||| || | || ||||||||||| ||||| | ||||| || Sbjct 523494 AGAACAAACTCTTAATCAGCTTTTGACAGAGATGGATGGTTTTGAAGGAAATACTGGTAT 523435 Query 175608 TGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGG 175667 | | || ||||| ||||| || || | || || || ||| ||| | || | || || Sbjct 523434 TATAGTAATTGCAGCCACAAACCGTGCAGACATTCTAGATTCCGCTTTGCTAAGGCCCGG 523375 Query 175668 TCGTTTTGA 175676 || ||||| Sbjct 523374 ACGCTTTGA 523366 >seq195 Length=1014778 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||||||||| |||||||| | || || | ||| ||||| |||||||||||||| || Sbjct 873487 CTCCTTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTC 873546 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||||| | || | ||| | |||||||| || |||||||| || || |||||| || Sbjct 873547 CTTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAA 873606 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || ||||| || ||||| |||||| Sbjct 873607 CGAGCTCATCTCCCGCGACGAGGGCCTCCAC 873637 >seq52 Length=1645480 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/317 (68%), Gaps = 9/317 (3%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| |||| ||| | | ||| || || || |||||||| ||| Sbjct 1429516 GGCGCCAAGATCCCCA-AGGCTGCCTCTTGGTCGGTCCTCCCGGCACCGGAAAGACTCTC 1429574 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || ||||| ||| |||| || || | || || ||| || |||| | ||| | | Sbjct 1429575 CTGGCCCGGGCCGTCGCCGGCGAGGCCGG-GTGCCTTTCTTCTCGTGCGCCGCCTCCGAA 1429633 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||| | || ||||| || || || | || || ||| | || || | ||| Sbjct 1429634 TTCGTGGAGCTCTTCGTTGGAGTTGGAGCTTCTCGTGTCCGGGATTTGTTCGAGAAGGCC 1429693 Query 175456 C-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | ||| | || || ||||||||||| || ||||||||||||||||| | ||| || Sbjct 1429694 AAGTCGAAAGC--CCCTGCATTGTCTTCATCGACGAGATTGATGCGGTGGGGAGGCAGCG 1429751 Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | || || | | | | | ||||| ||||| || || || |||||||| || | Sbjct 1429752 GGGGGCCGGTCTCGGAGG--TGGGAATGATGAGAGGGAGCAGACTATTAATCAGCTCTTG 1429809 Query 175573 ACCGAGATGGATGGCTT 175589 || || |||||||| || Sbjct 1429810 ACGGAAATGGATGGTTT 1429826 >seq3 Length=3667290 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA 175461 ||||||||||| ||||| || || || ||| | ||| | ||| | | || | | Sbjct 2995992 GAGATGTTTGTCGGTGTAGGGGCTTCGAGAGTTAGGGATTTGTTTAATAAGGCAAAAGCA 2996051 Query 175462 AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCT 175521 ||| |||||| | ||||||||||| ||||||||||| || || | |||| | | | Sbjct 2996052 AATTCTCCATGTCTGGTCTTCATTGACGAGATTGATGCAGTAGGAAGGCAAAGAGGAACA 2996111 Query 175522 GG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGA 175579 || | | | | || |||||| || |||||||||||| | || ||||| || || || | Sbjct 2996112 GGAATTGGAGG--AGGAAATGATGAAAGAGAACAAACATTGAACCAACTGCTTACTGAAA 2996169 Query 175580 TGGATGGCTT 175589 ||||||| || Sbjct 2996170 TGGATGGTTT 2996179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596370077297280