Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq518 116 5e-21 seq85 82.4 9e-11 >seq518 Length=568097 Score = 116 bits (128), Expect = 5e-21 Identities = 276/409 (67%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 7888 GATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAG 7947 ||||||| ||||| ||||||||||| ||||| | ||||| ||| ||||||||| | || Sbjct 409159 GATGCTATGTCTAGAGGGAAGTTGTGAGCATTACATTCATACATTACTTCCATATCAAAC 409218 Query 7948 TTTGCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAAC 8006 || | || || || | ||| | | | | ||| | | ||| | | || ||| Sbjct 409219 TTACCA-TGATTGATGATATCAGTCTAGATGGTAATAACATAACCCTGATTGTCTACATT 409277 Query 8007 TGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGT 8066 | |||||| | || || || || ||||| || | ||| || | |||| | || ||| Sbjct 409278 AGTTTGGTTGGAATTGAAACCATTTAGGTTGAAAGTCATAGTACTGATACGTAAAGCAGT 409337 Query 8067 TAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG--AAG--ACTTCTACTGT 8122 |||| | | || ||| | | | | ||| | || || || ||| || | ||| Sbjct 409338 TAACTAGATACCTACTGCAAGCCAAGCAGCCAAAAATAAATGTTAAGGAACAAGAATTGT 409397 Query 8123 TGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATAT 8182 || |||| | ||||| || |||| ||||| ||||| || ||||| ||| | ||||||| Sbjct 409398 TG--AAACTA-GCATATTGTAAGACAAATCTGCCAAA-TAACCATGGGCACCTACAATAT 409453 Query 8183 TATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTG 8242 ||| || || || |||||| || ||||||| | || |||||| | || ||| | Sbjct 409454 TATGAGTTTCGTCCACTTGACTGAATCTATAACCTTCATTAGTAGACTCATTTTTAGTGG 409513 Query 8243 TCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAA 8291 | || |||| | || | | || | || ||||| || ||||||||||| Sbjct 409514 TTTCCTTGATCAAAGTATAGGTTGCCAAGGAACCATGGATAGCACTGAA 409562 >seq85 Length=1476802 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 8255 GAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTG 8314 || || | || || || ||||| |||||||||||||| || || || ||||| | ||| | Sbjct 645656 GAAAATAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 645597 Query 8315 CTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 |||| || ||| || || ||||||||||| ||||| || || ||||||| Sbjct 645596 CTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCATTTGGAAT 645544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615656424820320