Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq2728 174 2e-38 seq518 104 3e-17 seq916 91.5 2e-13 seq27 86.0 7e-12 >seq2728 Length=129770 Score = 174 bits (192), Expect = 2e-38 Identities = 230/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 167597 TGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAG 167656 |||| | || || ||||||| ||| ||||| |||||||| | ||||||||||| | Sbjct 96491 TGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTG 96550 Query 167657 CAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAG 167716 |||| || || || || | | ||||| | |||||||||||||||||||| || | Sbjct 96551 CAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTG 96610 Query 167717 CAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATT 167776 | ||||| || ||||| || ||||| || ||||||| ||| ||| | ||| | |||| Sbjct 96611 CTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATT 96670 Query 167777 TCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTC 167836 |||||||| |||| || || || | | | |||| | || | | | || | Sbjct 96671 TCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGTCGGCC 96730 Query 167837 TGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATC 167896 ||||||| || || |||||||| || |||||||| ||||| || | || ||||| |||| Sbjct 96731 TGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGATC 96790 Query 167897 CAGAGTTTGAAACTTTCTA 167915 | || ||||| |||||||| Sbjct 96791 CTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 104 bits (114), Expect = 3e-17 Identities = 400/624 (64%), Gaps = 36/624 (6%) Strand=Plus/Minus Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| || |||| || ||||| |||||| || ||| | || || || ||||| | || Sbjct 409758 GTCTGGGCATGCATCTTTGGATTGTTGTTGCATATTCAACTCCTGTTGCAGCTGCTACTG 409699 Query 166187 CAGTATTCCTAGTA-TATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGA 166245 | |||| || | || ||| | |||||||| |||||||||||| ||||| Sbjct 409698 C--TATTTCTTGACCTACCCTATTGGTCAAGGAAGTTTCTCTGAT---ATGCCTT----- 409649 Query 166246 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 166305 ||||| ||| || || || || |||| || ||| ||||| Sbjct 409648 -------GAACA----ACTGTATTTT--------AAATGGATTACAACATCCTCGTGCAT 409608 Query 166306 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 166365 || | || ||| | || | || || |||| | | | || || |||||||| || Sbjct 409607 CCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCTTATTCAGTGCTATCCAT 409548 Query 166366 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 166425 || |||| || | | || | | | || || ||| ||| || || || | Sbjct 409547 GGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAAATGAGTCTACTAATGAA 409488 Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485 ||||| | ||| | |||| || ||||| | || || |||| || |||||||| || Sbjct 409487 GGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAGGTGCCCATGGTTATTTG 409428 Query 166486 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTG-CACTTCTTCCT 166544 | |||| |||| ||||| ||| |||||||| || | ||||| || || || | Sbjct 409427 GCAGATTTG-TCTTACAATATGCTAGTTTCAACAATTCTTGTTCCTTAACATTTATTTTT 409369 Query 166545 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCC--ACGATGGCA 166602 ||||| |||| || || || |||| ||| || || || ||| || || ||| | Sbjct 409368 GGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGC--TTTACGTATCAGTACTATGACT 409311 Query 166603 TTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTG 166662 |||||||| || |||||||| | |||||| | | | || ||||||| ||| | Sbjct 409310 TTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAATCAGGGTTATGTTATT 409251 Query 166663 AACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGT 166722 | || || | | ||| | | || | | | | | ||||||||| ||| |||| || Sbjct 409250 ACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGAAGTAATGTATGAATGT 409191 Query 166723 AACGCACACAACTTCCCCCTCGAC 166746 || || ||||||||||| || ||| Sbjct 409190 AATGCTCACAACTTCCCTCTAGAC 409167 >seq916 Length=298367 Score = 91.5 bits (100), Expect = 2e-13 Identities = 215/323 (67%), Gaps = 14/323 (4%) Strand=Plus/Plus Query 167302 TGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTT 167361 ||||||||||| || |||||||| | || || | ||||| | | || | || Sbjct 270196 TGGGCTTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTC 270255 Query 167362 GAACTTGCTCGCCTGATTGGTA----TCCGTCCCTACAATGCTATTGCTTTCTCTGGTCC 167417 |||| |||| ||||| || | | | || ||||| || || |||| || ||| Sbjct 270256 GAACCTGCT----TGATTTGTGCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCC 270311 Query 167418 TATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTT 167477 |||||| | || ||| || ||| | | ||||| || |||||| || |||||||| Sbjct 270312 AATTGCTATTTT-GTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTT 270370 Query 167478 TGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCA 167537 ||| || || || || || || || ||||| |||||||| ||||||| || || Sbjct 270371 TGCACC-----CAGGTGTTGCAGCTATATTTTGATTCATCCTCTTCTTCCAAGGGTTTCA 270425 Query 167538 CAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATT 167597 || |||| |||| ||||||||| ||| || || || || | | ||| ||| | Sbjct 270426 TAATTGGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGGAGTATTAGGTACTGCTCT 270485 Query 167598 GCTTTCTGCAATCCATGGTGTTA 167620 ||| | | || ||||||| || Sbjct 270486 GCTATGCACTATTCATGGTGCTA 270508 >seq27 Length=2012675 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485 ||||||| ||||| ||||| |||||||| || || |||||||| ||||||| ||| || Sbjct 1262127 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG-TTATTTT 1262185 Query 166486 GGTCGTTTGATCTTCCAATACGCT 166509 || || |||||||||||||| ||| Sbjct 1262186 GGCCGATTGATCTTCCAATATGCT 1262209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561060290606400