Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq518 125 2e-24 seq27 89.7 2e-13 >seq518 Length=568097 Score = 125 bits (138), Expect = 2e-24 Identities = 313/470 (67%), Gaps = 8/470 (2%) Strand=Plus/Minus Query 41754 ACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTT 41813 |||| || || ||||||| | ||||||| |||||| ||||| |||| | | | Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT 409565 Query 41814 TGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAG 41873 | ||| |||||| || ||| | ||| || | | | || || || ||| || Sbjct 409564 TATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAA 409505 Query 41874 AGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTG 41933 | | || || | ||||| | || |||||| ||| || ||| | |||||||| | Sbjct 409504 ATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAG 409445 Query 41934 CTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTA 41993 ||| || || ||||| || | || |||| ||||||||||| || || ||||| || Sbjct 409444 GTGCCCATGGTTATTT-GGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGTT 409386 Query 41994 GTCTT--CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGG 42051 ||| ||||| ||| | ||||| |||| || |||||||| | ||| |||| || Sbjct 409385 C-CTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGC--TTTA 409329 Query 42052 CGTGTC--TACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCT 42109 ||| || ||| ||| |||||||| | ||||||||||| | |||||| || ||| Sbjct 409328 CGTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGAC 409269 Query 42110 GCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTT 42169 | | || | || || | || || | |||| || | || | || || ||| | Sbjct 409268 AATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATG 409209 Query 42170 GAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGCATC 42219 || || ||| |||| | || || ||||||||||| || ||| | ||||| Sbjct 409208 GAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGACATAGCATC 409159 >seq27 Length=2012675 Score = 89.7 bits (98), Expect = 2e-13 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || |||||||||||||| ||||| ||||| || |||||||| | |||||| Sbjct 1262127 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCA-TGTTATTTT 1262185 Query 41951 GGTCGGCTTATCTTCCAATATGCTAG 41976 || || | ||||||||||||||||| Sbjct 1262186 GGCCGATTGATCTTCCAATATGCTAG 1262211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146167943664224