Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq518 125 2e-24 >seq518 Length=568097 Score = 125 bits (138), Expect = 2e-24 Identities = 315/469 (67%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 42811 AACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTG 42870 ||||| || ||||||| | || ||| | |||| ||||| |||| | | | || Sbjct 409622 AACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCTTA 409563 Query 42871 TTCTCAGCTATGCATGGTAGTCTTGTCA-CCTCTTCTCTTGTGCGTGAAACGACTGAAAA 42929 ||| ||||| |||||| |||| || ||| | || | | ||||| ||| |||| Sbjct 409562 TTCAGTGCTATCCATGGTTC-CTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAAA 409504 Query 42930 CGAAAGCCAA--AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTT 42987 || | | | ||| | || || | ||| |||||| ||| || ||| |||| ||||| Sbjct 409503 TGA--GTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTA 409446 Query 42988 GCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCG 43046 | || |||||||| ||||| | || |||| |||||||| | |||| || ||| | | Sbjct 409445 GGTGCCCATGGTTA-TTTGGCAGATTTGTCTTACAATATGC-TAGTTTCAACAATTCTTG 409388 Query 43047 CTCTTTG-CACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTG 43105 || || || || ||| | || ||||||| | || || || | ||| ||| || | Sbjct 409387 TTCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTAC 409328 Query 43106 GCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATA 43165 | ||||||||||| | || ||| | |||||||| || | |||||| | ||| || | Sbjct 409327 GTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACA 409268 Query 43166 ATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTG 43225 ||||| | |||| || | | | | ||||||| | |||| || || ||| | | Sbjct 409267 ATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGG 409208 Query 43226 AGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATC 43274 | || ||| | || | ||||| || |||||||| || || | ||||| Sbjct 409207 AAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGACATAGCATC 409159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143487195682288