Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq2728 217 2e-51 seq518 145 9e-30 seq916 113 5e-20 seq291 89.7 6e-13 seq85 89.7 6e-13 >seq2728 Length=129770 Score = 217 bits (240), Expect = 2e-51 Identities = 246/327 (75%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 66695 CTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAA 66754 ||||| ||||| ||||| || || || ||||| ||||| | || |||||||| || || Sbjct 96816 CTTTGATTAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGAATTTCTTGGGAAACGAA 96757 Query 66755 GTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATG-GAACTTGTCCAAAGAC 66813 |||||||||||| ||||| ||||| || || | | |||| | | ||| |||| | | Sbjct 96756 GTCATAAGCACGGAGGTTCAGAGCCAGGCCGACTAC-CCGAAGAGCACTCATCCATAAAT 96698 Query 66814 CCATAACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATAC 66873 | | || || ||||| | |||||||||||| ||||| | |||||| ||| |||| | Sbjct 96697 CGGTTACTGGTACAAATAGCATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACCC 96638 Query 66874 CAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAG 66933 ||||||| || ||||| |||||||| ||||| |||||||| ||||| ||||| |||||| Sbjct 96637 CAAAGATTTGGGACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTCTCTTCGGCTTGAG 96578 Query 66934 TAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTA 66993 | | || || || ||| || ||||| ||||||||||| | | |||||| |||| Sbjct 96577 TTGGGTTAAAAGCACGGAATGTATTTGCACCGTCACCATCTTCGAATAAAGTATTTTCTA 96518 Query 66994 CTGTAACACCATGAATGGCAGAAAGCA 67020 | ||| |||||||||| || | |||| Sbjct 96517 CGGTAGCACCATGAATAGCGCATAGCA 96491 >seq518 Length=568097 Score = 145 bits (160), Expect = 9e-30 Identities = 309/459 (67%), Gaps = 2/459 (0%) Strand=Plus/Plus Query 67848 GTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCG 67907 ||| |||||||||||||| || |||| |||| ||| ||||||||| | || | | | Sbjct 409167 GTCTAGAGGGAAGTTGTGAGCATTACATTCATACATTACTTCCATATCAAACTTACCATG 409226 Query 67908 GTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTT 67967 |||| | || | | || | | | ||| | ||| | | || | ||| ||||| Sbjct 409227 ATTGATGATATCAGTCTAGATGGTAATAACATAACCCTGATTGTCTACATTAGTTTGGTT 409286 Query 67968 GAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGAT 68027 | | ||||||||||| |||||||| | ||| || || | || | ||||| ||| |||| Sbjct 409287 GGAATTGAAACCATTTAGGTTGAAAGTCATAGTACTGATACGTAAAGCAGTTAACTAGAT 409346 Query 68028 ACCAACGACAGGCCATGCAGCAAGGAAGAAGTG-CAGCGAACGGGAGTTGTTGAACGATG 68086 ||| || || |||| ||||| | || || || | |||| || |||||||| | Sbjct 409347 ACCTACTGCAAGCCAAGCAGCCAAAAATAAATGTTAAGGAACAAGAATTGTTGAAACTAG 409406 Query 68087 CATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTT 68146 |||| || |||| || | | || || ||||| ||| | ||||| || | ||| || | Sbjct 409407 CATATTGTAAGA-CAAATCTGCCAAATAACCATGGGCACCTACAATATTATGAGTTTCGT 409465 Query 68147 CTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCA 68206 | |||||| ||| | ||||| | || |||||| ||| ||||||||| | || Sbjct 409466 CCACTTGACTGAATCTATAACCTTCATTAGTAGACTCATTTTTAGTGGTTTCCTTGATCA 409525 Query 68207 GTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAG 68266 | | | || ||| ||||||||| || |||||||| | | | | |||| || | Sbjct 409526 AAGTATAGGTTGCCAAGGAACCATGGATAGCACTGAATAAGAAGTTGCTATATACACCGG 409585 Query 68267 CAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGT 68305 | | || | ||| || | || |||| |||||||||| Sbjct 409586 CTCCACCCAACATGTGAGATGGATGCACGAGGATGTTGT 409624 >seq916 Length=298367 Score = 113 bits (124), Expect = 5e-20 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 66997 TAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATAT 67056 || |||||||||| | | |||| ||| ||| | | || || || || ||| || Sbjct 270508 TAGCACCATGAATAGTGCATAGCAGAGCAGTACCTAATACTCCGGCAACTCCAGTCAAAT 270449 Query 67057 GAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTG 67116 |||| |||||||| |||| ||||| || ||||| | |||||| | ||||| ||| || | Sbjct 270448 GAAATGGGTTCAACATCCAATTATGAAACCCTTGGAAGAAGAGGATGAATCAAAATATAG 270389 Query 67117 CTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAA 67176 ||| || || || || || |||||||| ||||||||||| || || |||| | Sbjct 270388 CTGCAACACCTG-----GGTGCAAAGAACCAACTAGATTGACCCAGTGGATAAATGAAGA 270334 Query 67177 AGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTA 67225 | ||| ||| |||| ||| || ||| || |||| || || ||||| || Sbjct 270333 ATACAGAAAC-AAAATAGCAATTGGAACAAAGAATGCGATTGCATTATA 270286 >seq291 Length=752601 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 66990 TCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACA--- 67046 |||| ||| |||||||||| || | |||| | | |||| | |||| | | ||| Sbjct 473073 TCTATGGTAGCACCATGAATAGCGCATAGCAGAGTAGCACCTA--ATAC-TCCAACAATT 473129 Query 67047 CCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAAT 67106 |||||||||||||| |||||||| |||| ||||| || ||||| | |||||| | |||| Sbjct 473130 CCCATCATATGAAATGGGTTCAACATCCAATTATGAAACCCTTGGAAGAAGAGGATGAAT 473189 Query 67107 CGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATT 67155 ||||| || |||| || ||| || || || ||||||| |||| Sbjct 473190 CGAAATATAGCTGCTACGTTAAAATTGGGCGCAAAGAACCAACCAGATT 473238 >seq85 Length=1476802 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68215 GTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCG 68274 || |||| |||||||||||| |||||||| || || || || ||||| ||||| || || Sbjct 645648 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCC 645589 Query 68275 AGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 | ||| || || || ||||| ||||||||||| || |||||| Sbjct 645588 AACATGTGAAATGGATGCATAAGGATGTTGTGTTCCATTTGGAA 645545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571863076405920