Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq26 105 1e-17 seq297 91.5 3e-13 seq4 86.0 1e-11 >seq26 Length=2273700 Score = 105 bits (116), Expect = 1e-17 Identities = 162/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || | || ||||| | ||||| || || || || || || || Sbjct 490750 ATCCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTGA-ATGTTGTAGTCC 490692 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| ||||| ||||||||||||||||| | | ||| ||||| ||| Sbjct 490691 GCCAACGTGCGCCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGT 490632 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || ||| |||||||| || | || || ||| Sbjct 490631 GGGATGCCCTCCTTATCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCT 490572 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 490571 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 490522 Score = 100 bits (110), Expect = 6e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || |||||||||| ||||| || |||| || | || || ||||||||||| | ||| Sbjct 442510 ATGTTATAATCAGCCAATGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTC 442451 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || ||||| || || ||||| ||||| ||| ||||| || | | Sbjct 442450 TGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGGATTTTTGCTTTAACATTGTCAATTGTA 442391 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || |||||||| || ||||| || |||| ||| | ||||| ||||||||| Sbjct 442390 TCAGAGCTCTCAACTTCTAGGGTGATGGTCTTTCCAG-TAAGGGTTTAA-CAATATCTGC 442333 Query 192535 AT 192536 || Sbjct 442332 AT 442331 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||| | ||| | ||| || ||||||||| || | Sbjct 443009 ACCACCACGAAGGCGGAGGACAAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGC 442950 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| || | || || |||||||| || | ||| || |||||||| || Sbjct 442949 CAAAGTACGCCCATCCTCAAGCTGCTTTCCAGCAAA-ATAAGTCT-TGCTGATCAGGAGG 442892 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| |||||||| || || || |||||| || | || || || || Sbjct 442891 AATACCTTCCTTATCTTGGATCTTGGCCTTGACATTATCGATGGTGTCCGAGCTCTCCAC 442832 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 442831 TTCTAGAGTGATGGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 442784 Score = 91.5 bits (100), Expect = 3e-13 Identities = 161/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| || | || ||||| | ||||| || ||| || || || || || Sbjct 442785 ATCCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTC 442727 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | || || |||| |||| |||| |||||||||||| | | ||| ||||| || Sbjct 442726 TGCCAGCGTGCGCCCATCCTCCAGCTGTT-ACCAGCAAAGATGAGCCGCTGCTGATCTGG 442668 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || || ||||| || |||||| |||||||| || | || || || Sbjct 442667 TGGGATGCCCTCCTTATCCTGGATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTC 442608 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 442607 TACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 442557 >seq297 Length=752846 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | || | || || || | ||| | |||||| ||| || ||||| Sbjct 217935 ATTCCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCT 217876 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | |||||| || |||| || | || || |||||||| || | | ||| ||||||||| Sbjct 217875 GCTAATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGT 217816 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || ||| |||||| || | ||||| || Sbjct 217815 GGGATGCCCTCCTTATCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCA 217756 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || || | || || || || |||||||| Sbjct 217755 ACCTCAAGGGTGATAGTCTTCCCTGTAAGGGTCTTGATGAAGATCTGCAT 217706 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||| || | || || || |||| ||||| || || ||||||||||| | | Sbjct 217661 GATGTTATAGTCTGCCAAGGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAGGCG 217602 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||||||||| || || ||||| || || || ||| ||| |||||| || | Sbjct 217601 CTGCTGATCAGGTGG-ATCCCCTCTTTGTCCTGAATCTTAGCTTTCACATTATCAATGGT 217543 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || || || || || || || || ||||| | || || | ||| ||||| Sbjct 217542 GTCTGAGCTCTCAACCTCAAGGGTGATTGTCTTGCCAGTAAGGGTCTTCACAAAGATCTG 217483 Query 192534 CAT 192536 ||| Sbjct 217482 CAT 217480 >seq4 Length=3455462 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | || || | || || || | ||||| ||| || ||| |||||||| | Sbjct 2201044 CCACCACGGAGGCGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCC 2201103 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| ||| || ||||||||||| || | ||| || || || || Sbjct 2201104 AGGGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGA 2201163 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || |||||| || || || || | || || || || Sbjct 2201164 ATGCCTTCCTTGTCCTGAATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCGACC 2201223 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 2201224 TCAAGAGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 2201270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984142509180600