Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq403 154 4e-32 seq1260 145 2e-29 seq3 131 5e-25 seq29 123 7e-23 seq5 109 2e-18 seq199 105 2e-17 seq871 91.5 4e-13 seq43 87.8 5e-12 >seq403 Length=584219 Score = 154 bits (170), Expect = 4e-32 Identities = 241/341 (71%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||||||||| |||||| ||| | | || || Sbjct 498092 ATTTCTAACAGTACCATCATATTTGACCATAATGTCCTCCATAGCCTTCACAAGGCGCCG 498151 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||| || || ||| ||||| ||||| |||||||||| ||| | | |||||| Sbjct 498152 CTGAATATATCCCGTCTCAGAAGTTTTCACAGCAGTATCAATTAAACCTTCCCTACCACC 498211 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||||||||| | || | ||| || ||| | || ||||| |||| || || Sbjct 498212 CATAGCATGGAAGAAGAATTCCTGTGGTGTTAACCCACGAAGGTAGGAGTTCTCCACAAA 498271 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 |||||| || ||| || ||| || || ||||| || | || | | || | | Sbjct 498272 ACCACGACTTTCAGGCCCATAGTCATCTTTTGTGAAGTGAGGTAATGTTC-GATCAATGA 498330 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || || || || || || || ||||| ||||||||||||| || | | ||||||| Sbjct 498331 -ACCCATAAGGAATCCGTTTGCCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGA 498389 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| || | | ||| ||||| || || ||| | ||||| Sbjct 498390 GAAATGTTAATAAAACTACCCTTTGATCCTGCAGTAACCAT 498430 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||||| | || || || ||| || |||||||||| ||||||| |||||||| Sbjct 497367 GGGAACACCAAGAGTAACATTCT--TTGCACT-AACACCAGCATAGTGGAA-GTATTCAG 497422 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 || | ||||| | ||| |||||||| ||| || || || ||||| ||| || || Sbjct 497423 GGTCATCTGAGTTGCTGGTTCACCAATGGATTGGGCAGCTATGCAACCAATCATCTCACC 497482 Query 301950 TGGTGCTACAATAGACT 301966 ||||||||||| |||| Sbjct 497483 TGGTGCTACAAGTGACT 497499 >seq1260 Length=182037 Score = 145 bits (160), Expect = 2e-29 Identities = 239/341 (70%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | |||||||||||||||| ||| | | || || Sbjct 160790 ATTTCTAACAGTACCATCATATTTGACCATAATGTCTTCCATAGCCTTCACAAGGCGCCG 160731 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||| ||||| ||| ||||| ||||| |||||||||| || | | |||||| Sbjct 160730 CTGAATATACCCAGTCTCAGAAGTTTTCACAGCAGTATCAATTAATCCTTCCCTACCACC 160671 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||||||||| | || | ||| || ||| | || | ||| |||| || || Sbjct 160670 CATAGCATGGAAGAAGAATTCCTGTGGTGTTAACCCACGAAGGTAAGAGTTCTCCACAAA 160611 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 |||||| || ||| || ||| || || ||||| || | || | | || | | Sbjct 160610 ACCACGACTTTCAGGCCCATAGTCATCTTTTGTGAAGTGAGGTAATGTTC-GATCAATGA 160552 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || || || || || || || ||||| ||||||||||||| || | | ||||||| Sbjct 160551 -ACCCATAAGGAATCCGTTTGCCCTCAACATTCTGCTGTCCCACACAGGCAGTCATCTGA 160493 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| || | ||| || || || || || ||||||| Sbjct 160492 GAAATGTTAATGAAACTACCTTTTGATCCTGCCGTTACCAT 160452 Score = 84.2 bits (92), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||||| | || || || ||| || || |||||||| ||||||||||||| || Sbjct 161513 GGGAACACCAAGAGTAACATTCT--TTGCACTCA-CACCAGCATAGTGGAAAGTATTTAG 161457 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 || | ||||| | ||| |||||||| ||| || || | ||||| |||||| || Sbjct 161456 GGTCATCTGAGTTGCTGGTTCACCAATGGATTGGGCAGCTACACAACCAATCATTTCACC 161397 Query 301950 TGGTGCTACAATAGACT 301966 ||||||||| | |||| Sbjct 161396 TGGTGCTACCAGTGACT 161380 >seq3 Length=3667290 Score = 131 bits (144), Expect = 5e-25 Identities = 282/420 (67%), Gaps = 14/420 (3%) Strand=Plus/Minus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || | | ||| || | ||||||||| |||||||||||| ||| Sbjct 2996179 AAACCATCCATTTCAGTAAGCAGTTGGTTCAATGTTTGTTCTCTTTCATCATTT---CCT 2996123 Query 289000 CTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAA 289055 | | || | || | |||| ||| | || || |||||||| ||||||||||| Sbjct 2996122 CCT-------CCAATTCCTGTTCCTCTTTGCCTTCCTACTGCATCAATCTCGTCAATGAA 2996070 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | || ||| ||||||||| | | || | ||| || || || || | || || || Sbjct 2996069 GACCAGACATGGAGAATTTGCTTTTGCCTTATTAAACAAATCCCTAACTCTCGAAGCCCC 2996010 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGC 289175 | ||| ||| |||| || | || |||||| | || | | ||| | || ||| Sbjct 2996009 TACACCGACAAACATCTCAATGAACTCAGAACCTGACAAGGAGAAGAAAGGAACCCCTGC 2995950 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 || ||||||| || | ||||| | |||||| || ||||||||||| || ||| || Sbjct 2995949 CTCCCCTGCTATGGCTTTAGCCAGCAATGTCTTCCCAGTTCCAGGTGGCCCAACTAGAAG 2995890 Query 289236 AACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 ||| |||||||| | |||| || ||| | ||||||| ||| ||| || || || Sbjct 2995889 AACACCCTTTGGGATCCTTGCTCCCACAGCAGCAAATTTCTCTGGGGACTTCAAGAACTC 2995830 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAAT 289355 ||||| |||| | || | | ||| |||||| || ||||| || |||| || || Sbjct 2995829 AACAATCTCCTTGAAGTCTTGCTCTGCTTCATCAACACCGGCTACGTCGTCAAATGTGAT 2995770 >seq29 Length=2149955 Score = 123 bits (136), Expect = 7e-23 Identities = 319/475 (67%), Gaps = 17/475 (4%) Strand=Plus/Plus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AA 288940 |||| || || || | |||||| ||||| | ||| | |||| | | ||| ||| || Sbjct 523396 TCTAGAATGTCTGCACGGTTTGTGGCTGCAATTACTATAATACCAGTA--TTTCCTTCAA 523453 Query 288941 ATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTC 289000 | |||||||| ||| |||| |||||||| |||||||| ||||||||||| |||| Sbjct 523454 AACCATCCATCTCTGTCAAAAGCTGATTAAGAGTTTGTTCTCTTTCATCATT----CCTC 523509 Query 289001 TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCA 289060 | | ||| | | || |||| | ||||||||||||||||| |||| || | | Sbjct 523510 CTCCAATACCTG--TTCCT-CTTTGCCTTCCAACAGCATCAATTTCATCAACAAACACAA 523566 Query 289061 CACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 || |||| ||| | | | || ||| ||| | || | || || || || |||| Sbjct 523567 TGCATGGAGCATTCTCTTTGGCCTTCTTGAAAAGA--TCACGAACTCGTGAAGCACCAAC 523624 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 |||||| |||| |||||||| || || | || | |||| | |||| ||| ||||| Sbjct 523625 TCCAACAAACATCTCTACAAACTCCGACCCTGA-AATTGAGAAAAATGGAACACCTGCTT 523683 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | ||||| | |||| | || || | ||||| || ||||| || || || | | |||| Sbjct 523684 CTCCTGCAATTGCCTTAGCAAGCAAAGTCTTCCCAGTTCCCGGAGGACCAACAAGAAGAA 523743 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 | || || || | || || | | || || | ||||| |||| ||||| || | Sbjct 523744 CACCTTTAGGAATACGAGCACCTACTGCAGTAAATCTTTCAGGTTTCTTCAAAAACTCCA 523803 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | ||| || || | ||| || ||||| ||| || |||||| | || || Sbjct 523804 CCACCTCCATAAAATCCTGTTTGGCTTCATCTACTCCAGCAACATCATCGAATGT 523858 >seq5 Length=3255894 Score = 109 bits (120), Expect = 2e-18 Identities = 258/382 (68%), Gaps = 7/382 (2%) Strand=Plus/Minus Query 288963 TTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCt 289022 |||||| ||||| ||| | |||||||| ||||| | ||| | || | || || Sbjct 620443 TTGATTTAGTGTGCTTTCACGCTCATCATTGGAACC-CGAGAAGCCTCC--ACGGCCTCT 620387 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 | | ||||| ||||||||||| ||||| ||||| | | || | | |||| || Sbjct 620386 TGCTCGACCAATTGCATCAATTTCATCAAT-AAAATTATGCTAGGTGCACACTGTCGGGC 620328 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 ||||| | ||| || || | ||| | ||||| ||||||| ||||||| | ||| || Sbjct 620327 TTCTGCAACAAGTTC-CTCACTCTGGAAGGTCCAACACCAACAAACATTTCCATAAAATC 620269 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| | | | | || | ||| | |||| | ||| || ||| ||| | || |||| Sbjct 620268 TGAACCAGCAA-TAGACAAGAAAGGTACACCAGATTCCCCAGCTGTTGCTTTTGCAAGAA 620210 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 |||| || ||||| ||||| || || | | || | || || || | ||| || || Sbjct 620209 GTGTTTTCCCTGTACCAGGAGGGCCTACAAGAAGGGCACCTTTGGGAATTTTCGCTCCTA 620150 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 || |||||||| || | ||||| || | |||| |||| || ||| | ||| | Sbjct 620149 GTTCCTCATATTTCTTTGGATTTTTTAAGAAGTGCACAAATTCCATAATTTCTTGTTTGG 620090 Query 289322 CCTCATCACATCCTGCTACATC 289343 |||||||||| || |||||||| Sbjct 620089 CCTCATCACAGCCAGCTACATC 620068 >seq199 Length=986226 Score = 105 bits (116), Expect = 2e-17 Identities = 317/475 (67%), Gaps = 17/475 (4%) Strand=Plus/Plus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT--TTGCTT-A 288939 |||| ||||| || | || || ||||| | ||||| || | | || || ||| | Sbjct 367559 TCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTAT---TCCAGTATTTCCTTCA 367615 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || || | |||||||| |||||||| || |||||||| |||| Sbjct 367616 AACCCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCCACCT 367675 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | ||| || || ||| || || |||||||||||||| || || | ||||| Sbjct 367676 CC--AATT--CCTGTTC-CTCTTTGCCTT-CCAACAGCATCAATCTCATCCA-CAAAATG 367728 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | || || | ||| | | | || | ||| | || | || || || || || | | Sbjct 367729 ATGCAAGGCGCATTCTCTTTGGCCTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACA 367788 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 |||||| |||| |||||||| ||||| | || | |||| | |||| ||| |||||| Sbjct 367789 CCAACAAACATCTCTACAAACTCAGAGCCAGA-AATTGAGAAAAATGGAACACCTGCTTC 367847 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || | |||| | || || | ||| || || ||||| || || || | ||||| Sbjct 367848 ACCAGCAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGGAGGACCAATAAGAAGAAC 367907 Query 289239 TCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTAC 289298 |||||||| | ||| || | | || | |||| || |||| || || || || Sbjct 367908 ACCCTTTGGAATCCGTGCACCTACTGCAGTAAACCTCTCTGGTTTCTTCAAGAACTCCAC 367967 Query 289299 AATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | |||| | ||| || | ||||| ||||| ||| || |||||| |||| || Sbjct 367968 CACTTCCATGAAG-TCCTGCTTTGCTTCATCTACTCCAGCAACATCATCAAATGT 368021 >seq871 Length=299316 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||||| || | |||||||| ||||| | ||| ||||||| ||| ||||||||| Sbjct 240218 TTGCAAATAGATCCCGAACACGGGAGGCTCCCATACCCACATACAATTCGACAAATTCAC 240159 Query 289145 AAGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || || |||| || || | || | |||||| || ||||| || | || | ||| Sbjct 240158 TTGCAGAACAACTT--ATAAAGGGAACTTCTGCTTCTCCAGCTACAGCTTTTGCTAAAAG 240101 Query 289203 TGTCTTACCTGTTCCAGG 289220 |||||||||||||||||| Sbjct 240100 TGTCTTACCTGTTCCAGG 240083 >seq43 Length=1757131 Score = 87.8 bits (96), Expect = 5e-12 Identities = 256/383 (67%), Gaps = 11/383 (3%) Strand=Plus/Plus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 ||||| ||||| ||| | |||||||| | |||| ||||| ||| | || ||| Sbjct 953463 TGATTTAGTGTACTTTCGCGCTCATCATTGGCACCTGA-GAATCCCCC--ACGGCCTCTT 953519 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||||| |||||||| || ||||| ||||| | | || | | |||| || Sbjct 953520 GCCCGACCAATTGCATCAATCTCATCAAT-AAAATTATGCTAGGTGCACACTGTCGGGC- 953577 Query 289084 ATTGCA-AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || || || || | || || | ||| | ||||| ||| ||| ||||||| | ||| || Sbjct 953578 -TTCCACAACAAGTTCCTCACCCTGGAAGGTCCAACACCGACAAACATTTCCATAAAATC 953636 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| | | | | || | ||| | |||| | || ||||| ||| | || |||| Sbjct 953637 TGAACCAGCAA-TAGACAAGAAAGGTACACCAGACTCTCCTGCAGTTGCTTTTGCAAGAA 953695 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCA 289260 |||| || || || ||||| || || | | ||| | || || || | ||| || |||| Sbjct 953696 GTGTTTTTCCCGTGCCAGGAGGGCCTACAAGAAGAGCACCTTTGGGAATTTTCGCTCCCA 953755 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | || ||| |||| || | ||||| || | |||| |||| || ||| | ||| Sbjct 953756 GTTC-CTCATACTTCTTGGGATTTTTTAAGAAGTGCACAAATTCCATAATTTCTTGTTTG 953814 Query 289321 GCCTCATCACATCCTGCTACATC 289343 ||||||||||| || |||||||| Sbjct 953815 GCCTCATCACAGCCAGCTACATC 953837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471313044368772