Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2728 170 2e-37 seq518 113 5e-20 seq4860 89.7 6e-13 seq85 87.8 2e-12 seq2774 84.2 2e-11 >seq2728 Length=129770 Score = 170 bits (188), Expect = 2e-37 Identities = 238/334 (71%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 159862 TACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATG 159921 || |||| | || || || | || || ||||| | ||| ||||| || || | | | Sbjct 96476 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 96535 Query 159922 AAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTT 159981 ||||||| || |||||||| || || ||| | ||||||||| || ||||||| Sbjct 96536 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 96595 Query 159982 ACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACA 160041 | || ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || | Sbjct 96596 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 96655 Query 160042 AGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTA 160101 | | ||| | |||||||| ||| | ||||| || || | | | | |||| || Sbjct 96656 AATGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTC 96715 Query 160102 TTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCA 160161 || | | | ||||| ||||| || || |||||||| || ||||| ||||| || Sbjct 96716 TTCGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTC 96775 Query 160162 GAGCAGCAGAAGATCCAGAATTTGAGACCTTCTA 160195 | ||||| |||||||| ||||||||||| ||||| Sbjct 96776 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 113 bits (124), Expect = 5e-20 Identities = 240/354 (68%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 158207 GAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACC 158266 ||||| ||| ||| ||||| || | ||||| | ||| |||||| ||| || || Sbjct 409517 GAAACCACTAAAAATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACT 409458 Query 158267 TATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 158326 |||| || || | || ||||| || || | |||| |||| ||||| ||| ||| Sbjct 409457 CATAATATTGTAGGTGCCCATGGTTATTTGGCAGATTTG-TCTTACAATATGCTAGTTTC 409399 Query 158327 AACAACTCCCGTTCCTTG-CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 158385 ||||| || ||||||| || || || | ||||| |||| || || || |||| ||| Sbjct 409398 AACAATTCTTGTTCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTT 409339 Query 158386 CACCGCCCTTGGCGTCTCC--ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 158443 || || || ||| || || ||| | |||||||| || |||||||| | |||||| Sbjct 409338 AACTGC--TTTACGTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAA 409281 Query 158444 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCT 158503 | | | || ||||||| ||| | | || || | | ||| | | || | | | Sbjct 409280 ACTAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGT 409221 Query 158504 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 158557 ||| ||||||||| ||| |||| |||| || ||||||||||| || ||| Sbjct 409220 AAGTTTGATATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 409167 >seq4860 Length=43173 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 160112 TGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGA 160171 |||||| ||||| || || | |||||| || ||| | ||||| ||| | ||||| | Sbjct 9556 TGGCCTGGCTCTGAACCTCCATGCTTATGACTTCATTTTCCAAGAAATCCGTGCAGCGAA 9497 Query 160172 AGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCT 160210 |||||| ||||||||||| |||||||||||||| ||||| Sbjct 9496 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCT 9458 >seq85 Length=1476802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 158086 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158145 ||||||| |||||||||||||||||||| || || || ||| | ||||| ||||| || Sbjct 645544 ATTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGT 645603 Query 158146 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 158178 |||||| || || || ||| ||||||||| || Sbjct 645604 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 645636 >seq2774 Length=74964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 160170 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGT 160229 ||||||| ||||||||||| ||||| |||||||| ||||| || |||||||| | | | Sbjct 26830 GAAGATCTTGAATTTGAGACTTTCTATACCAAAAATATCCTCTTAAACGAAGGTATTCAT 26889 Query 160230 GCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCC 160275 || ||| ||| || | | ||||| |||||||| |||| |||| Sbjct 26890 GCTTGGATGGTGGCTCCGAAGCAACCTCATGAAAATCTTATATTCC 26935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548190996181920