Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq2728 219 5e-52 seq518 113 5e-20 seq916 98.7 1e-15 seq2774 91.5 2e-13 seq639 86.0 7e-12 >seq2728 Length=129770 Score = 219 bits (242), Expect = 5e-52 Identities = 240/319 (75%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 152942 TGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAG 153001 |||| | || |||||||||| ||| ||||| |||||||| | |||||||||| | Sbjct 96491 TGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTG 96550 Query 153002 CAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTG 153061 |||| || ||| ||||| || ||||||| |||||||| ||||| ||||| |||| Sbjct 96551 CAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTG 96610 Query 153062 CTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATT 153121 ||||||| || |||||||| || ||||| |||||||| ||||||| | ||| | |||| Sbjct 96611 CTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATT 96670 Query 153122 TCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTC 153181 |||||||||| |||||||| || | | | | |||| | || || | | | || | Sbjct 96671 TCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGTCGGCC 96730 Query 153182 TTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATC 153241 | ||||| || || |||||||| || || || || |||||||| | || | ||||||| Sbjct 96731 TGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGATC 96790 Query 153242 CTGAATTTGAGACGTTCTA 153260 ||||||||||||| ||||| Sbjct 96791 CTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 113 bits (124), Expect = 5e-20 Identities = 240/353 (68%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 151466 GAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 151525 || ||||| |||| ||||| || | ||||| | ||| |||||| || || || Sbjct 409517 GAAACCACTAAAAATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACT 409458 Query 151526 TACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTC 151585 | || || || | || || ||||| ||||| | | |||| ||||| ||| ||| Sbjct 409457 CATAATATTGTAGGTGCCCATGGTTA-TTTGGCAGATTTGTCTTACAATATGCTAGTTTC 409399 Query 151586 AACAATTCCCGTTCGCT-GCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 151644 |||||||| |||| | || || || | || || |||| || || ||||||| ||| Sbjct 409398 AACAATTCTTGTTCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTT 409339 Query 151645 CACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 151704 ||||| | || |||| || ||| | |||||||| || |||||||| | |||||| | Sbjct 409338 AACTGCTTTACGTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAAC 409279 Query 151705 CATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGT-GCAG 151763 | | || |||||| | || | | || || | | || | | || | | | | Sbjct 409278 TAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAA 409219 Query 151764 GTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGAC 151816 || | | ||||||||| ||| | || |||||||||||||||||||||| ||| Sbjct 409218 GT-TTGATATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 409167 >seq916 Length=298367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 152737 TACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTAC 152796 || ||||| || || |||| || ||| || ||| |||| ||| || || |||| || Sbjct 270286 TATAATGCAATCGCATTCTTTGTTCCAATTGCTATTTT-GTTTCTGTATTCTTCATTTAT 270344 Query 152797 CCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGA 152856 || ||||||||||| |||||||| || || || || || ||||| || || || Sbjct 270345 CCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTGA 270399 Query 152857 TTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGT 152916 ||| | |||||| | ||||| || || || |||| ||||| || |||||| ||| || Sbjct 270400 TTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACTGGA 270459 Query 152917 GTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTA 152965 ||||| || | || || || |||| | | |||||||||| || Sbjct 270460 GTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGCTA 270508 >seq2774 Length=74964 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 153235 GAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGT 153294 ||||||| |||||||||||| |||||||| || |||||||| || ||||||||| ||| | Sbjct 26830 GAAGATCTTGAATTTGAGACTTTCTATACCAAAAATATCCTCTTAAACGAAGGTATTCAT 26889 Query 153295 GCTTGGTTGGCACCTGTTGACCAACCTCATGAGAA 153329 |||||| ||| || | ||||||||||| || Sbjct 26890 GCTTGGATGGTGGCTCCGAAGCAACCTCATGAAAA 26924 >seq639 Length=439984 Score = 86.0 bits (94), Expect = 7e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 153235 GAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGT 153294 ||||||||| |||||||||| ||||| | || ||||| || || ||||||| | ||||| Sbjct 425125 GAAGATCCTAAATTTGAGACTTTCTACATCAAAAATATTCTCTTAAACGAAGATATTCGT 425066 Query 153295 GCTTGGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTG 153354 |||||| ||| || || || |||||||| ||| | | |||||||| |||| | Sbjct 425065 GCTTGGATGGTGGCTCAGGATCAGCCTCATGA-AACCTTATATTCCCTGAGAAGGTTCTA 425007 Query 153355 CCACGAGGCAACGCTCT 153371 || | || || ||||| Sbjct 425006 CCCTGCGGAAATGCTCT 424990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549438578788320