Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq2728 100 3e-16 seq2163 95.1 1e-14 seq1863 89.7 6e-13 >seq2728 Length=129770 Score = 100 bits (110), Expect = 3e-16 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 74063 GAAGAGACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCA 74122 |||||||||||| ||| | ||||||||| | || ||||| || || ||||| | || Sbjct 96586 GAAGAGACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 96645 Query 74123 TTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGG 74182 ||||| || ||| | | ||||| ||| ||||| | || ||||| || | | | | ||| Sbjct 96646 TTTTCCAATAAATGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGG 96705 Query 74183 A--CATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTAT 74240 | | ||| |||| || || || || || ||||| | || || ||||| || | Sbjct 96706 ATGAGTGCTCTTCGGGTA--GTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTT 96763 Query 74241 CTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTA 74286 | ||||| || | ||||| ||||| || || ||||| || ||||| Sbjct 96764 CCCAAGAAATTCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq2163 Length=162151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 |||||||||||| || || |||||| | || | || |||||||| || ||||| || Sbjct 135435 GATGATTGGTTATGAAGGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTT 135376 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 |||| |||||| | || | ||||||||||| |||| | ||||| || || |||||| Sbjct 135375 CCTTATGCTTATTTCGCTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGG 135316 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTA 73555 || || ||||| | || || ||| | || || ||||| || || || | ||| Sbjct 135315 TATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGTAGTT 135256 Query 73556 TCAACACCTG 73565 || || |||| Sbjct 135255 TCCACTCCTG 135246 >seq1863 Length=177779 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/148 (75%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | |||||| ||||| ||| | ||||| || || | || ||||||||| Sbjct 42067 TTTGATATTATGGATGATGGGTTACGGAGGAACCGTTT-GTTTTG-TAGGCTGGTCTGGT 42124 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || |||||||||| |||| | |||||||||||| |||| || | ||| Sbjct 42125 CTATTGCTCTTTTCTTGTGCTTATTTAGCTTTAGGAGGTTGGTTCATAGGTACAATTTTT 42184 Query 73484 GTGACCTCATGGTACACACATGGTATTG 73511 || || |||||||| || |||| |||| Sbjct 42185 GTAACTTCATGGTATACCTATGG-ATTG 42211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572682002424480