Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq859 226 3e-53 seq195 223 4e-52 seq5 111 2e-18 seq1006 87.8 2e-11 >seq859 Length=348630 Score = 226 bits (250), Expect = 3e-53 Identities = 230/297 (77%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | |||| | | ||| Sbjct 128142 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGATCTGG 128083 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| |||| ||||||||| |||||||||||| ||||||||| Sbjct 128082 ACGTCGGACATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 128023 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || |||| ||| ||||||||||||||||||| | |||| | | ||||||| Sbjct 128022 AAGGCGAGGATGTGGGAGATAAAGTGGCGCTCGTCGGTGGTGAGGGTGTGGAGCCAGTGG 127963 Query 869810 ACGGTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 || | ||| | ||| || ||||||||||||||||||| ||||| ||||||| || Sbjct 127962 --GGAGATCGCTGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCGACGGCCTTCTT 127905 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||||||||||| || | |||||||||| ||||| | |||||| | |||||| Sbjct 127904 GTACATCTCCCACACCGGAGGGTAGCGGATGGGGAACATCGAAAAGCGATCGGGGTT 127848 Score = 168 bits (186), Expect = 8e-36 Identities = 209/284 (74%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| ||| || |||||||| || |||||| Sbjct 128419 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCACGCTTC 128360 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||| | |||||| ||| ||||| ||||| ||||| ||||||||||| Sbjct 128359 TTGAGCCAGAAGATAGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGCGGCAAAT 128300 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | ||| |||||||| || | ||| | ||| ||||||| | ||||| Sbjct 128299 GCAACGAGGCGCTCGGCGAAAGACTCGGAGGACTC------GATCCACCGGAGGGCCCAT 128246 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | |||||| || |||||| ||| || || |||| ||||||||| ||| | | ||||||| Sbjct 128245 TGGGCCTTCTTTGTCACCGCCGGGACGGTCTCGACGGCGCGAAA-AGGCGAT-CTTTTCG 128188 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 |||| ||||||| |||| |||| ||||| || || |||| Sbjct 128187 TCCGGATCCTTGATGTAGGATTCGAGGAGGAGGGAGTACATCTC 128144 Score = 120 bits (132), Expect = 4e-21 Identities = 216/312 (69%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || || | | |||||| || || ||||| || | || || || Sbjct 128732 CGCCTTCTGGTAGTCTCCGACCCTCTTCTCGAAGAA-TTAGTCTTCCCTTGAAGTGATAT 128674 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || ||||||||| ||| || || | | | ||| ||| | ||||| | | | | Sbjct 128673 CAGCTCCATCCAGTCGAATGGATTCGCCACCCCGTACAACTTCCCACATCCCAAAGCCCC 128614 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 | || || || || || ||||| |||||||||| ||| | | ||||||| || | Sbjct 128613 CAAGAGCCGATCCGCCACGAACTCAATGTACTGGCTCATCAAATCCCCGTTCATCCC-AC 128555 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 |||||||||||||||| |||| || ||||| |||| || || || || ||| |||| Sbjct 128554 CAGCGCCACCGGCAGCGCGTCGCA-ACGAACTCCCTCTCAATGTCCACAGCGTCGGCGAT 128496 Query 868930 GATCTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 |||| | || ||| ||||| ||||| | ||| | | |||||| |||||||| Sbjct 128495 GATCGACTTGATGCGGTCCTCCGAGAGCTTGCGGTTGAGGAGGGAGTAGAGGAGGCAGGC 128436 Query 868990 AAAGTCGCAGTG 869001 ||||||||||| Sbjct 128435 GAAGTCGCAGTG 128424 >seq195 Length=1014778 Score = 223 bits (246), Expect = 4e-52 Identities = 229/295 (78%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| |||||||| |||||||||||||| ||||| | |||| || | ||| Sbjct 873353 GAGTGGATGTT-TCGATGGCTATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGCAATCTGG 873295 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| ||| ||||||||| |||||||||||| ||||||||| Sbjct 873294 ACGTCGGACATGAAGCGGGTGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 873235 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGAC---ACCCAGTGG 869809 || || |||||||| ||| ||||||||||||||| | |||| | | ||||||| Sbjct 873234 AA-GCAAGGACGTGGGAGATGAAGTGGCGCTCGTCGGGGGTGAGGGTGTGGAGCCAGTGG 873176 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||||||| |||||| ||||||||||||||||||| ||||| ||||||| ||| Sbjct 873175 GGAG-GTCGGCGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCGACGGCCTTCTTG 873117 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGT 869924 ||||||||||| || || |||| ||||| ||||| | ||||||| ||||| Sbjct 873116 TACATCTCCCACACCTGGGGGTACCGGATGGGGAACATCGAGAAGCGGTCGGGGT 873062 Score = 158 bits (174), Expect = 1e-32 Identities = 225/313 (72%), Gaps = 3/313 (1%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || || | | |||||||||||| ||||| |||| |||||| || Sbjct 873945 CGCCTTCTGGTAGTCCCCGACCCTCTTCTCGAAAAAGTTCGTCTTCCCCTGGAGCGATAT 873886 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||||||||| |||||| |||| | | ||| ||| |||| || | || | | Sbjct 873885 CAACTCCATCCAATCGAACGGATTGGCTGCCCCGTACAACTTCCCGCACCCAA-CGCCCC 873827 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 | || || || || || ||||||||||| | || ||| | | | ||||| || | Sbjct 873826 CAAGAGCCGATCCGCCACGAACTCGATGTATTCGCTCATCAAATCCCCATTCATCCCCAC 873767 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 ||||||||||||| || |||| || ||||| ||||||| ||||| || ||| |||| Sbjct 873766 CAGCGCCACCGGCAACGCGTCGCAGACGAACTCCCTCTCGATGTCGACAGCGTCGGCGAT 873707 Query 868930 GATCTGCCTGGGCAC-GTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 ||| || || | | ||| | | | |||||| | ||| | | |||||| ||||||| Sbjct 873706 GAT-TGACTTGATGCGGTCCTCAGGGAGCTTGTGGTTGAGGAGGGAGTAGAGGAGGCAGG 873648 Query 868989 CAAAGTCGCAGTG 869001 | ||||||||||| Sbjct 873647 CGAAGTCGCAGTG 873635 Score = 154 bits (170), Expect = 2e-31 Identities = 207/285 (73%), Gaps = 10/285 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| || || |||||||||||||||||| Sbjct 873630 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCCGCGCTTC 873571 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| ||||| ||| ||||| ||||| ||||| || || | ||| Sbjct 873570 TTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGCAGAGAAG 873511 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGT-CGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | ||| ||||| || |||| || ||||| | | |||||| | |||||| Sbjct 873510 GCCACGAGGCGCTCCGCGAAGGAGTCCGAGGAC-------TCAATCCACCGGAGCGCCCA 873458 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 | |||||| ||| ||||| ||| ||||| |||| || ||||| ||| ||| |||||| Sbjct 873457 CTGGGCCTTCTTCGCCACCGCCGGGACCGTCTCGACAGCACGAAA-AGGCGGT-CTTTTC 873400 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | ||||| |||| |||| || | || || ||||| |||| Sbjct 873399 GTCAGGGTCTTTGATGTAGGATTCCAGCAAAAGAGAATACATCTC 873355 >seq5 Length=3255894 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| |||| |||||||||||| || | | || Sbjct 1517982 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGA 1518041 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || |||||| |||||| | ||| |||| | Sbjct 1518042 TGGTGGGCTTCTTGTTGTAGCGGGCGAGACGGGAGGCCTCCTGGGCGAGCTTCTCGAAGA 1518101 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| | ||||| || | ||| |||| Sbjct 1518102 TGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTCGAGATTCCGATGTCCGGGT 1518161 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||| ||||| Sbjct 1518162 GGACCTGCTTCAGGACCTTGAAGATG 1518187 >seq1006 Length=252064 Score = 87.8 bits (96), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || ||||| | | || ||||| |||| |||||||||||| || | | ||| || Sbjct 210026 GCTAGCTCGCCAGGGAGGACGAGGCGAACGGAGGTCTGGATCTCCCGGGAGGTGATGGTC 209967 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| || | |||| ||| ||||| | ||| || | |||||| Sbjct 209966 GGCTTCTTGTTGTAGCGGGCCAAGCGGGACGCCTCCTGGGCGAGCTTCTCAAAGATGTCG 209907 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 |||| || |||||||||| ||| | |||| |||||||||| | ||| || || ||| Sbjct 209906 TTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATGCCGATGTCCGGATGGACC 209847 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||||||| ||||| Sbjct 209846 TGCTTCAACACCTTGAAGATG 209826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104943477341652