Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4 140 2e-28 seq26 132 4e-26 seq167 116 3e-21 seq297 113 3e-20 seq62 93.3 3e-14 seq782 89.7 4e-13 seq1413 87.8 1e-12 >seq4 Length=3455462 Score = 140 bits (154), Expect = 2e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| ||||| || || || ||||| |||||||||||||| | |||||| | Sbjct 2201056 CGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCA 2201115 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || |||||| | ||||| | ||||| ||||| ||||| || || ||| Sbjct 2201116 TCCTCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTG 2201175 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || |||||| | || || | || | ||||| || || || |||||||| || Sbjct 2201176 TCCTG-AATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCGACCTCAAGAGTGAT 2201234 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || ||||| |||||||| Sbjct 2201235 GGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 2201270 >seq26 Length=2273700 Score = 132 bits (146), Expect = 4e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || || |||||||| || |||||||||||||| || | || || | Sbjct 442543 CGGAGGACCAAGTGGAGGGTGGATTCCTTCTGAATGTTATAATCAGCCAATGTACGGCCA 442484 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||||||| | || | || ||||| || || ||||| ||||| ||| Sbjct 442483 TCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATTCCCTCCTTG 442424 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | |||| ||| ||| | || | || ||||| || ||||| || || || Sbjct 442423 TCTTGGATTTTTGCTTTAACATTGTCAATTGTATCAGAGCTCTCAACTTCTAGGGTGATG 442364 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||| ||||| |||||| ||||||||||| Sbjct 442363 GTCTTTCCAG-TAAGGGTTTAAC-AATATCTGCAT 442331 Score = 114 bits (126), Expect = 1e-20 Identities = 155/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| || ||||| ||| ||||||| || ||||| | ||||| | Sbjct 490735 CGGAGGACCAAATGAAGAGTAGATTCCTTT-GAATGTTGTAGTCCGCCAACGTGCGCCCA 490677 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||||| |||||| | || | | ||||||||||| || || ||||| || Sbjct 490676 TCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTA 490617 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | |||||||| ||||| ||||| || || Sbjct 490616 TCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATG 490557 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || ||||| |||||||| Sbjct 490556 GTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 490522 Score = 109 bits (120), Expect = 4e-19 Identities = 154/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| || ||||| ||||||||||| || || || | ||||| | Sbjct 442770 CGGAGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCA 442711 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | || | | |||||||| || || || ||||| || Sbjct 442710 TCCTCCAGCTG-TTACCAGCAAAGATGAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTA 442652 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || ||| | || | |||||||| ||||| || || || || Sbjct 442651 TCCTGGATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATG 442592 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || ||||| |||||||| Sbjct 442591 GTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 442557 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | |||||| ||||||||||| || ||||| || || || | ||| || | Sbjct 490963 CGCAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGCTAGGGTACGCCCA 490904 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | || | || ||||| || || || || || || ||| Sbjct 490903 TCCTCAAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTG 490844 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | ||||| || || ||||| | ||| || Sbjct 490843 TCCTGGATCTTGGCCTTGACATTATCGATGGTGTCCGAGCTCTCCACTTCCAAAGTGATG 490784 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || ||||| |||||||| Sbjct 490783 GTCTTCCCAGTGAGGGTCTTCACAAAAATCTGCAT 490749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| || ||||| |||||||||| || || || | ||||| | Sbjct 453222 CGGAGGACCAAATGAAGAGTAGATTC-CTTTGAATGTTGTAGTCTGCCAGTGTGCGCCCA 453164 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | || | | |||||||| || || || ||||| || Sbjct 453163 TCCTCCAGCTG-TTACCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTA 453105 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || || ||||| || ||||| ||||| || || Sbjct 453104 TCCTGGATCTTAGCCTTTACATTGTCAACGGTGTCGGAGCTCTCTACCTCAAGGGTGATG 453045 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | || || ||||| |||||||| Sbjct 453044 GTCTT-CCGGTAAGAGTCTTCACAAAGATCTGCAT 453011 >seq167 Length=1102902 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| ||| || || || |||||||| ||||||||||| || | ||||||| Sbjct 191362 CGGAGCACCAGATGGAGAGTAGACTCTTTTTGGATGTTATAATCGGCGAGGGTGCGACCG 191421 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || || || | |||| | ||||| |||||||||||||| || || Sbjct 191422 TCCTCAAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATACCTTCCTTA 191481 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | ||||| | || | ||||| || || || || | || || Sbjct 191482 TCTTG-AATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCGACCTCCAAGGTGAT 191540 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || ||||||||||| Sbjct 191541 GGTCTTGCCGGTGAGGGTCTTGACGAATATCTGCAT 191576 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||| ||| || ||||| || || ||||| ||||| || |||| ||| | Sbjct 191134 ACGGAGCACCAGATGGAGGGTGGACTCCTTCTGAATATTATAGTCGGCAAGGGTCCTGCC 191193 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || || ||| | |||| || ||||| ||||||||||| ||||| || Sbjct 191194 GTCCTCAAGCTGCTTCCCGGCA-AGATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCTT 191252 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || |||||| | || | || || || || || ||||| || || Sbjct 191253 ATCCTGGATCTTCGCCTTGACATTATCAATGGTATCCGAGCTCTCCACCTCAAGGGTGAT 191312 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || ||||| |||||||| Sbjct 191313 CGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGCAT 191348 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | || || ||||| || ||||||||||||||||| || Sbjct 191578 CCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAATCGGCG 191637 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| || | |||| | ||||| ||||| || Sbjct 191638 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 191697 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| || || | || ||||| | || | ||||| || || || Sbjct 191698 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACC 191757 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || ||||| || | ||| || || || |||||||| Sbjct 191758 TCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 191804 >seq297 Length=752846 Score = 113 bits (124), Expect = 3e-20 Identities = 166/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 29563 CCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATG 29622 ||||| | || || |||| || | || || || ||||| |||||||| || || | | Sbjct 217702 CCCCTTAGGCGGAGAACCAGGTGCAAGGTCGACTCCTTTTGGATGTTATAGTCTGCCAAG 217643 Query 29623 GTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATA 29682 |||||| ||| || | || || |||||| | |||| | |||||||| || ||| | Sbjct 217642 GTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGA-TC 217584 Query 29683 CCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 ||||||||||| || ||| || | ||| ||| | || | ||||| || || || || Sbjct 217583 CCCTCTTTGTCCTG-AATCTTAGCTTTCACATTATCAATGGTGTCTGAGCTCTCAACCTC 217525 Query 29742 AAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 ||| || || || |||||||| | ||| || ||||| |||||||| | ||| Sbjct 217524 AAGGGTGATTGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATCTGAAA 217474 >seq62 Length=1642893 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 29552 ATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTAT 29611 |||||| || ||||| | | || || | ||||| || || ||||||||||| || | Sbjct 1294482 ATCGTT--CCACCCCTAAGCCTCAAAACGAGGTGAAGAGTTGACTCTTTTTGAATATTGT 1294539 Query 29612 AATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGAT 29671 |||| || | ||| ||| ||| || | ||||| |||||| | ||||| |||||||||| Sbjct 1294540 AATCAGCTAGGGTTCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAACCTTTGCTGAT 1294599 Query 29672 CCGGCGGAATACCCTCTTTGTCTTGTAA 29699 | || || || ||||| ||||| || || Sbjct 1294600 CTGGGGGTATCCCCTCCTTGTCCTGCAA 1294627 >seq782 Length=366579 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||| ||| | || || |||||||||||||| ||||| || | ||| || ||| || Sbjct 138077 ACCAGATGCAATGTTGACTCTTTTTGAATGTTGTAATCAGCCAAGGTTCGGCCATCTTCC 138018 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | ||||| ||||| | ||||||||||| ||||| || || |||||||| ||||| || Sbjct 138017 AACTGTTTTCCAGCGAAAATCAATCTTTGTTGATCTGGGGGTATACCCTCCTTGTCCTG 137959 >seq1413 Length=175152 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/119 (78%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||| ||| || || || |||||||||||||| ||||| || | ||| ||| ||| || Sbjct 102842 ACCAGATGCAGTGTTGACTCTTTTTGAATGTTGTAATCAGCTA-GGTTCGACCATCTTCC 102784 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | || || |||||| | ||||||||||| ||||| || || |||||||| ||||| || Sbjct 102783 AACTGCTTTCCAGCA-AAATCAATCTTTGTTGATCTGG-GGTATACCCTCCTTGTCCTG 102727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385093584352596