Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq2728 187 3e-42 seq2163 93.3 5e-14 seq291 82.4 8e-11 >seq2728 Length=129770 Score = 187 bits (206), Expect = 3e-42 Identities = 240/331 (73%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 159346 TAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGG 159405 |||| | || || |||| ||||||||||| | || || |||||||| |||| ||| | Sbjct 96479 TAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAG 96538 Query 159406 ATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATT 159465 |||| || ||||| || || || ||| | ||||||||| || |||||||||| Sbjct 96539 ATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATT 96598 Query 159466 CTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGC 159525 | ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 96599 CAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAAT 96658 Query 159526 GGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTG 159585 | ||| | |||||||||||| | ||||| || || | | | |||||| | || Sbjct 96659 GTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTC 96718 Query 159586 GCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAG 159645 | | | || || ||||| || || |||||||| || ||||| ||||| || | | Sbjct 96719 GGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTG 96778 Query 159646 CAGCAGAAGATCCAGAATTTGAAACGTTCTA 159676 |||| |||||||| |||||||| || ||||| Sbjct 96779 CAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq2163 Length=162151 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 158803 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTTG 158862 |||| |||||| ||||||| ||||||||||| || | || | || ||||||| | | Sbjct 135419 GGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTTCCTTATGCTTATTTCG 135360 Query 158863 CTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCG 158922 || | || |||||| ||| || | ||||| | || |||||||| |||||| | | Sbjct 135359 CTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGGTATACCCATGGATTGG 135300 Query 158923 CTACTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACAGCAGCAGTTTCGACTCCAGC 158977 | | ||||||| | | ||| ||||| |||||| || || | |||||| ||||| || Sbjct 135299 CCAGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGTAGTTTCCACTCCTGC 135245 >seq291 Length=752601 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 159229 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTAC 159288 ||||||| || || || ||| || || || ||||| | ||| | |||||| | | Sbjct 473232 GTTGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCTTCTTCC 473173 Query 159289 AAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAG 159348 ||||||| || ||||||| | ||||| || |||||||||||| ||| ||| | ||| Sbjct 473172 AAGGGTTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGGAGTATTAG 473113 Query 159349 GTGGAGCACTTCTATCTGCTATTCATGG 159376 ||| | || |||| ||||||||||| Sbjct 473112 GTGCTACTCTGCTATGCGCTATTCATGG 473085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545091233244480