Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2728 187 3e-42 seq916 118 1e-21 seq291 95.1 1e-14 seq85 91.5 2e-13 seq27 84.2 3e-11 >seq2728 Length=129770 Score = 187 bits (206), Expect = 3e-42 Identities = 240/331 (73%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 179517 TGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGA 179576 ||||||||| | ||||||||||| | || ||||| ||||| || | |||||||| || Sbjct 96486 TGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGA 96545 Query 179577 ACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGT 179636 ||||| ||||| || || || | || |||| || ||||| ||||| ||||| Sbjct 96546 CGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGT 96605 Query 179637 TACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTT 179696 || || ||||| |||||||| || ||||| |||||| | ||| |||||| ||||||| Sbjct 96606 CACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTT 96665 Query 179697 CCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCAT 179756 || ||||||| ||| ||||| || || | | | | ||| | | || || | | | Sbjct 96666 ACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGT 96725 Query 179757 TGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGA 179816 || || ||||| || || ||||||||||| || || ||||| || | ||||| || Sbjct 96726 CGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGA 96785 Query 179817 AGATCCTGAGTTCGAGACGTTCTATACAAAG 179847 ||||||||| || ||||| ||||| ||||| Sbjct 96786 AGATCCTGAATTTGAGACTTTCTAATCAAAG 96816 >seq916 Length=298367 Score = 118 bits (130), Expect = 1e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 179316 TTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTA 179375 ||| ||||| || || || || ||| ||||| | || ||| |||||| |||| || Sbjct 270285 TTATAATGCAATCGCATTCTTTGTTCCAATTGCTATTTT-GTTTCTGTATTCTTCATTTA 270343 Query 179376 CCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAG 179435 ||||| || ||||| |||||||||||||| || |||||||| || || ||| | Sbjct 270344 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTG 270398 Query 179436 ATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGG 179495 |||| | || ||||| ||||| || || || |||| | ||||| ||||| ||| || Sbjct 270399 ATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACTGG 270458 Query 179496 AGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGG 179540 |||||| || | | ||| ||||||||| | |||||||||| Sbjct 270459 AGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGG 270503 >seq291 Length=752601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 179387 AATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTT 179446 |||| |||||||||||||||| ||| || || || || ||| ||||| | || | Sbjct 473238 AATCTGGTTGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCT 473179 Query 179447 TCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTA 179506 |||| ||||| || || || |||| | ||||| ||||| ||||||||| ||| || Sbjct 473178 TCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGGAG 473119 Query 179507 TCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACAT 179560 | | |||| | ||||||| | ||||||||||| | || |||| ||| ||| Sbjct 473118 TATTAGGTGCTACTCTGCTATGCGCTATTCATGGTGCTACCATAGA-AATCCAT 473066 >seq85 Length=1476802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 178064 ATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGT 178123 ||||||| |||||||| ||||||||||| || || |||||| | ||||| ||||| || Sbjct 645544 ATTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGT 645603 Query 178124 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 178156 |||||| || || || ||| |||||||||||| Sbjct 645604 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 645636 >seq27 Length=2012675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 178215 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTC 178274 ||||||| ||||| ||||| |||||||| ||||| ||||| || || |||| ||| || Sbjct 1262127 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG-TTATTTT 1262185 Query 178275 GGTCGTTTGATCTTCCAATATGC 178297 || || ||||||||||||||||| Sbjct 1262186 GGCCGATTGATCTTCCAATATGC 1262208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605464634604960