Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq297 87.8 2e-12 >seq297 Length=752846 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 137255 |||| || || |||| |||||||| || || ||||||||||| || |||| || | Sbjct 218146 CGCATCACCAAGTGAAG-GTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCA 218088 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 || || ||||| || |||||| |||| ||||| ||||| || ||||| || ||||| || Sbjct 218087 -TCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGG-ATTCCTTCCTT 218030 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| ||| ||| || | | || | ||||| | | || || || | ||| | Sbjct 218029 GTCCTGAATCTTTGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTGAT 217970 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| || |||| || || || || || ||||| Sbjct 217969 CGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 217934 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 || |||| ||| || | || || |||| || || |||||||| ||||||||||| ||| Sbjct 217932 CCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCTGCT 217873 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| || || || || || |||||| | ||||| || |||||||| || || Sbjct 217872 -AATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGTGG 217814 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || || || ||| ||| ||| | | || | ||||||| | || || Sbjct 217813 GATGCCCTCCTTATCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAAC 217754 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| || || | || || | ||| || ||||| Sbjct 217753 CTCAAGGGTGATAGTCTTCCCTGTAAGGGTCTTGATGAAGATCTGCAT 217706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488380606459200