Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1260 89.7 1e-12 seq403 84.2 5e-11 >seq1260 Length=182037 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 304922 ATTGCTGGAATTATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAA 304981 ||| || | | ||||||||| | || ||||||| |||| | || ||| | ||| Sbjct 158670 ATTTCTTGCAATATGCAGGCTACACAGCGATCTGGACGACCCATCAAATCTAT-ATGCAG 158728 Query 304982 CGCATTAAAGGT-AAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTT 305040 | | |||| ||||| ||||| ||| ||||||| | |||||||| ||||||||||| Sbjct 158729 TAGACTTAAGGCGAAAGAAGGTCGAATTAGAGGTAACTTGATGGGAAAGCGTGTTGATTT 158788 Query 305041 TAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCC 305100 | ||| ||| || ||||| ||||| | ||| | || ||||||| ||||| || Sbjct 158789 TTCAGCACGAACAGTCATCACTCCTGACCCAACAATCAACATTGATGAATTGGGAGTGCC 158848 Query 305101 AATTGAA--ATTGCTTTAAAACTAACATTTCCAGAGAAAGT 305139 ||| | || ||||| || ||||||| ||||| | ||| Sbjct 158849 --TTGGAGCATAGCTTTGAATCTAACATACCCAGAAACAGT 158887 >seq403 Length=584219 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||||| |||||| |||| || || ||||||||||| || |||| ||| | Sbjct 499646 GATTATGTTCTTTTCAATCGGCAGCCTAGTCTTCATAAAATGTCCATCATGGGTCACCGA 499587 Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAAGTG-CTTGTACGCCTTAT 305440 | ||| | | | | ||| ||||| ||||| ||| ||| ||| | || || Sbjct 499586 ATTAAAATCATGCCATACTCGACTTTTCGCTTAAACTTGTCTGTGACTTCT---CCATAC 499530 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| ||||||||||| ||||| ||||| |||||||| || |||||| Sbjct 499529 AATGCTGATTTTGATGGTGATGAGATGAACATGCATGTTCCCCAATCA 499482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186405947220516