Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq297 98.7 7e-16 >seq4 Length=3455462 Score = 104 bits (114), Expect = 2e-17 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || ||||| ||| ||||| ||||| ||||| | || ||||| | || || Sbjct 2201061 CACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCCTC 2201120 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||| ||||| ||||| |||||||||||||| || | || | ||||| ||||| Sbjct 2201121 CAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTG 2201180 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTT 33717 |||||| ||| || | ||| | ||||| | | | || || |||| ||||| || Sbjct 2201181 AATTTTAGCCTTC-ACGTTGTCAATCGTGTC-CGAGCTCTCGACCTCAAGAGTGATGGTC 2201238 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || | || || ||||||||||||||| Sbjct 2201239 TTCCCAGTGAGGGTCTTGACAAAGATCTGCATA 2201271 >seq297 Length=752846 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| || | |||||| || || | | || || || ||||||||||| | Sbjct 218158 ACCACC-CTCAGCCGCATCACCAAGTGAAGGTAGAT-TCCTTCTGAATGTTGTAATCTGC 218101 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || || | ||| ||||| ||||| || | ||||||||| ||| | || Sbjct 218100 CAGCGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGG 218041 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || || | |||| || | ||||||| |||| Sbjct 218040 -ATTCCTTCCTTGTCCTGAATCTT-TGCCTTGACATTATCAATGGTGTCGGAGCTCTCCA 217983 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||||| || ||||| | || || |||||||||||||| Sbjct 217982 CCTCCAAAGTGATCGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 217934 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| || || | ||||| || |||||| ||||||||| ||||||||||| | Sbjct 217932 CCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCTGCT 217873 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || || | || || || ||||| |||| ||||||||||| | || Sbjct 217872 AATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGTGGG 217813 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || || || ||| || || || |||| || | |||||| ||| || Sbjct 217812 ATGCCCTCCTTATCCTGAATCTT-TGCTTTCACATTATCAATGGTGTCTGAGCT---CTC 217757 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || ||||| | || || | ||||||||||| Sbjct 217756 AACCTCAAGGGTGATAGTCTTCCCTGTAAGGGTCTTGATGAAGATCTGCAT 217706 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33520 TCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG 33579 |||||||| | | ||| | || | || ||||| ||||| || |||||||| || Sbjct 218388 TCACCACCACGGAGACGCAGGACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCT 218329 Query 33580 GAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGC 33639 | || ||||| | || |||| || || |||||||| || | ||||||||||| | Sbjct 218328 GCAAGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCAGGG 218269 Query 33640 GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTC 33698 || | || || ||||| ||| || ||| | |||| || | |||||| || Sbjct 218268 GGTATGCCCTCCTTGTCCTGAATCTT-TGTCTTCACATTATCAATGGTGTCAGAACTCTC 218210 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | || || || || |||||||| || || ||||||||||||||| Sbjct 218209 CACCTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACAAAGATCTGCATA 218158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328596813323520