Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq167 129 1e-24 seq297 125 2e-23 seq26 114 3e-20 seq281 104 6e-17 seq4 102 2e-16 seq328 95.1 3e-14 seq155 89.7 1e-12 seq3665 84.2 5e-11 seq782 84.2 5e-11 >seq167 Length=1102902 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||| || ||||| || || || ||||| ||||| || || || || ||| Sbjct 191573 CAGATATTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCGGAC 191514 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || ||||| ||| ||||||| || Sbjct 191513 ACGATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAAGGTATTCCGCCGGACCAGCAG 191454 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||||||||| | || || || | || | |||||||| ||| || Sbjct 191453 CGTCTGATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACCCTCGCCGATTATAACATC 191394 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || |||||||||||||| || || || Sbjct 191393 CAAAAAGAGTCTACTCTCCATCTGGT 191368 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||||||||| || || || ||| Sbjct 191801 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTCGAGTCGTCGGAC 191742 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || ||||| || || |||||| || Sbjct 191741 ACGATCGACAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCGGACCAGCAG 191682 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| ||||||| || | || | |||||||| ||| | Sbjct 191681 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTCGCCGATTATAACATT 191622 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||||| || || |||||||| Sbjct 191621 CAAAAGGAGTCCACCCTCCACCTTGT 191596 >seq297 Length=752846 Score = 125 bits (138), Expect = 2e-23 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || ||||| || |||||||||||||| ||||| || || ||| Sbjct 217937 CAGATCTTTGTCAAGACTCTGACAGGGAAGACGATCACTTTGGAGGTGGAGAGCTCCGAC 217996 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||| || || |||||||| | || ||| || Sbjct 217997 ACCATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAAGGAATCCT-CCAGACCAGCAG 218055 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || |||||||| | || |||||| | || |||| ||||||||| | Sbjct 218056 CGTCTTATCTTTGCTGGAAAGCAACTTGAGGATGGACGCACGCTGGCAGATTACAACATT 218115 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| || ||||| |||||| Sbjct 218116 CAGAAGGAATCTAC-CTTCAC 218135 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||| || || || || ||||| ||||| ||||||||| Sbjct 218162 CAGATCTTTGTTAAGACTTTAACAGGGAAGACAATTACCTTGGAGGTGGAGAGTTCTGAC 218221 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||| || || || || || || || || Sbjct 218222 ACCATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATACCCCCTGATCAGCAG 218281 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| |||||| |||| ||||| | ||| | || || |||||| | Sbjct 218282 CGCCTCATCTTTGCCGGGAAGCAGCTGGAGGATGGTCGCACTCTTGCAGACTACAACATT 218341 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| || |||||||||||||| Sbjct 218342 CAGAAAGAATCAACTCTTCACCTTGT 218367 >seq26 Length=2273700 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||||||||||||||| || || ||| Sbjct 490752 CAGATTTTTGTGAAGACCCTCACTGGGAAGACCATCACTTTGGAAGTGGAGAGCTCGGAC 490811 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| || || ||| || Sbjct 490812 ACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCTGACCAGCAG 490871 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || || || || || |||||| | || ||||| | || | || || |||||| || Sbjct 490872 AGGCTCATTTTTGCTGGTAAGCAGCTTGAGGATGGGCGTACCCTAGCAGACTACAACATC 490931 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || |||||||| ||||| || | ||||| Sbjct 490932 CAGAAAGAATCCACTCTTCATCTTGTCCTGCGCCTTCG 490969 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | ||||| ||||| ||||| Sbjct 441377 CAGATCTTTGTTAAGACTCTGACTGGCAAGACCATCACCCTTGAAGTTGAAAGCTCTGAT 441436 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| ||||| ||||| || || || || || ||| || Sbjct 441437 ACAATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAACAG 441496 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || ||||| |||||||| || ||| | || ||||| | || |||| || |||||| | Sbjct 441497 AGGCTTATTTTCGCCGGCAAACAGCTTGAGGATGGTCGCACACTGGCTGACTACAACATT 441556 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||||||||| || || || |||||| | |||| Sbjct 441557 CAGAAAGAGTCGACGCTCCATCTTGTTCTCCGACT 441591 Score = 89.7 bits (98), Expect = 1e-12 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| |||||||| ||||| ||||||| ||||||||| |||||||| | ||||| || Sbjct 442990 ACAAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGCCAAAGTACGCCCATCCTCA 442931 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| || || ||||| | ||| ||| Sbjct 442930 AGCTGCTTTCCAGC-AAAATAAGTC-TTGCTGA 442900 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| || || ||||||||||||| ||||||||||||||||| | ||||| || Sbjct 442311 ACAAGGTGGAGTGTTGACTCTTTCTGGATGTTATAGTCAGCCAAAGTGCGGCCATCCTCA 442252 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 ||||| || || || ||||| |||| Sbjct 442251 AGCTGTTTGCCAGCAAAGATGAGCC 442227 >seq281 Length=803475 Score = 104 bits (114), Expect = 6e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || |||||||| | || ||||| || || ||||| | || Sbjct 255839 AAGACTCTCACGGGTAAGACGATCACCCTCGAGGTGGAGAGCTCGGACACTATTGACAAC 255898 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| ||||||| || || || |||||| Sbjct 255899 GTGAAGGCGAAGATCCAGGATAAGGAGGGGATTCCGCCGGACCAGCAGAGGCTGATCTTC 255958 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||| || || |||||| | || |||||||| |||| || |||||| Sbjct 255959 GCCGGGAAGCAACTGGAGGACGG-AGGACTCTCGCGGATTACAATATCCA-AAGGAGTCT 256016 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 256017 ACCCTCCACCTGGT 256030 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || || || || ||| Sbjct 254730 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGAC 254789 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| ||| Sbjct 254790 ACGATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATACCCCCGGACCAGCAA 254849 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| | || || || ||||| | ||||||||||| || Sbjct 254850 CGTCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACTCTCGCCGATTACAATATC 254909 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || |||||||| || || ||||| || Sbjct 254910 CAAAAAGAGTCCACCCTCCACCTCGT 254935 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| ||||||||| || | ||||| || ||||| Sbjct 255804 ACCAGGTGGAGGGTCGACTCCTTCTGGATATTATAGTCGGCGAGGGTCCTGCCGTCTTCA 255745 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 ||||| || |||||||||||||||| Sbjct 255744 AGCTGTTTCCCGGCGAAGATAAGCC 255720 >seq4 Length=3455462 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || |||||| | || || || || || ||| Sbjct 2201267 CAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACTCTTGAGGTCGAGAGCTCGGAC 2201208 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || ||||| || || ||||| ||| |||||| || Sbjct 2201207 ACGATTGACAACGTGAAGGCTAAAATTCAGGACAAGGAAGGCATTCCTCCGGACCAGCAG 2201148 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || |||||||| |||| ||||| | || |||| ||||| ||| || Sbjct 2201147 CGTTTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACCCTGGCGGATTATAACATC 2201088 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || ||||||||||||||| Sbjct 2201087 CAAAAGGAGTCTACTCTTCAC 2201067 >seq328 Length=735707 Score = 95.1 bits (104), Expect = 3e-14 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || | ||| || ||||| || || |||||||| | || || || || ||| Sbjct 5057 CAGATCTTGT-CAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCGGAC 4999 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| || ||||| || Sbjct 4998 ACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGATCAGCAG 4939 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||||||||||||| | || ||||| | || | ||||| ||||| || Sbjct 4938 CGCCTTATCTTCGCCGGAAAGCAGCTAGAGGATGGCCGCACCCTCGCCGACTACAATATC 4879 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || || ||||| ||| Sbjct 4878 CAGAAGGAGTCCACCCTCCACCTCGTT 4852 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| ||||| || || ||||| ||||||| ||| ||||| || | || | ||||| || Sbjct 4852 AACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCATCCTC 4911 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||||||||| || || ||| Sbjct 4912 TAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGA 4945 >seq155 Length=1009872 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || ||||| ||| |||||| |||| Sbjct 940393 AAGACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTCCGACACAATCGAGAAC 940334 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || || || | || |||||| Sbjct 940333 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAGCAGCGCCTCATCTTC 940274 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || ||||| |||| | ||||| |||||| | ||||| ||||| Sbjct 940273 GCCGGAAAGCAGCTCGAGGATGGCCGGACCCTCGCCGACTACAACATTCAGAAGGAGTCC 940214 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 940213 ACCCTCCACCTCGT 940200 >seq3665 Length=65255 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || ||||| || |||||||||||||| ||||| || |||| | Sbjct 60842 CAGATCTTTGTCAAAACTCTAACAGGGAATACGATCACTTTGGAGGTGGAGAGCTCTGGC 60901 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAAT 206276 || | || || ||| |||||||||||| || |||||||| Sbjct 60902 ACTATTGATAATGTTAAGGCAAAGATTCAAGATAAGGAAGGAAT 60945 >seq782 Length=366579 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 |||||| | || ||||| ||||| |||||||||||||| | || ||||| ||||||||| Sbjct 137989 CAAAGATTGATTTTCGCTGGAAAACAGTTGGAAGATGGCCGAACCTTGGCTGATTACAAC 138048 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 | || |||||||| || | || || ||||| || ||| Sbjct 138049 ATTCAAAAAGAGTCAACATTGCATCTGGTTTTAAGGCTT 138087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181415658534276