Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq85 98.7 3e-16 seq27 86.0 2e-12 >seq85 Length=1476802 Score = 98.7 bits (108), Expect = 3e-16 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 20011 ATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGT 20070 ||||||| ||||| ||||| || ||||| || || |||||| | ||||| |||||||| Sbjct 645544 ATTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGT 645603 Query 20071 ATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTA 20114 |||||| || || ||||||||||| ||||| ||||| |||| || Sbjct 645604 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTA 645646 >seq27 Length=2012675 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| || || ||||| ||||| || ||||| |||||||| ||||||| ||| ||| Sbjct 1262127 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG-TTATTTT 1262185 Query 20222 GGACGTTTGATCTTCCAATACGCT 20245 || || |||||||||||||| ||| Sbjct 1262186 GGCCGATTGATCTTCCAATATGCT 1262209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148781512997448