Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq859 352 4e-91 seq195 333 4e-85 seq5 127 3e-23 seq1006 104 3e-16 seq43 100 4e-15 seq16 100 4e-15 seq978 95.1 2e-13 >seq859 Length=348630 Score = 352 bits (390), Expect = 4e-91 Identities = 445/599 (74%), Gaps = 18/599 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| || || ||| ||||| | |||||| |||||||||||||||||| | | Sbjct 127831 GAGCCCCTCCT-CGCCCGAACCCCGATCGCTTTTCGATGTTCCCCATCCGCTACCCTCCG 127889 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 | ||||| |||||| || ||||||| |||||||| |||||||||||||||||||| || Sbjct 127890 GTGTGGGAGATGTAC-AAGAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGATCT 127948 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | | ||| | ||||||| | | || | | |||||||||||| || ||| Sbjct 127949 CTCCAGCGAT-CTCCCCACTGGCTCCACACCCTCACCACCGACGAGCGCCACTTTATCTC 128007 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||| |||||||||| || ||||||| ||| |||||||| ||||||||| |||| || Sbjct 128008 CCACATCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCC 128066 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 |||| ||| || ||||| | || ||||| || || ||||| ||||||||||||| Sbjct 128067 GCTTCATGTCCGACGTCCAGATCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCA 128126 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| ||||||||||| || | ||||| ||||| |||| ||||| ||||||| |||| Sbjct 128127 TCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCGG 128186 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| || || | ||| ||||||||| |||| || || ||| |||||| || |||||| Sbjct 128187 ACGA-AAAGATCGCCT-TTTCGCGCCGTCGAGACCGTCCCGGCGGTGACAAAGAAGGCCC 128244 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 | ||||| | ||||||| ||| | ||| |||| |||||||| ||||| | Sbjct 128245 AATGGGCCCTCCGGTGGATC------GAGTCCTCCGAGTCTTTCGCCGAGCGCCTCGTTG 128298 Query 1456192 GCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||||| ||| ||||| ||||| ||||| ||| |||||| | ||||| ||||||| Sbjct 128299 CATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCCTTCTGCTCTATCTTCTGGCTCA 128358 Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||||| || |||||||| || | || ||| |||||| | ||| |||||||| Sbjct 128359 AGAAGCGTGGTCTCATGCCGGGGC-TCACCTTCTCCAACGAGCTCATCTCCCGCGACGA 128416 Score = 96.9 bits (106), Expect = 5e-14 Identities = 199/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513 ||||| ||||| ||||| || |||||| | | ||| | ||||| ||| ||| Sbjct 128424 CACTGCGACTTCGCCTGCCTCCTCTACTCCCTCCTCAACCGCAAGCTCTCGGAGGACCGC 128483 Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573 |||| |||||||| ||| || || || || |||| ||||| || |||| ||||| Sbjct 128484 ATCAAGTCGATCATCGCCGACGCTGTGGACATTGAGAGGGAGTTCGTT-GCGACGCGCTG 128542 Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633 ||||||||||| | || ||||||| | ||| |||||||||||| | || || | Sbjct 128543 CCGGTGGCGCTGGT-GGGATGAACG-GGGATTTGATGAGCCAGTACATTG-AGTTCGTGG 128599 Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTC 1456693 | || || || | | ||| | || || || |||| ||| || ||| || || ||| Sbjct 128600 CGGATCGGCTCTTGGGGGCTTTGGGATGTGG-GAAGTTGTACGGGGTGGCGAATCCATTC 128658 Query 1456694 CCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||||||| |||| || || | || ||||| || || |||||| Sbjct 128659 GACTGGATGGAGCTGATATCACTTCAAGGGAAGACTAA-TTCTTCGAG 128705 >seq195 Length=1014778 Score = 333 bits (368), Expect = 4e-85 Identities = 424/567 (75%), Gaps = 24/567 (4%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||| || ||| | ||||| |||||| ||||||||||||| |||| | | Sbjct 873045 GAGCCGCTCCT-CGCCCGACCCCGA-CCGCTTCTCGATGTTCCCCATCCGGTACCCCCAG 873102 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 | ||||| |||||| || ||||||| |||||||| ||||||||||||||||||||||| Sbjct 873103 GTGTGGGAGATGTAC-AAGAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGACCT 873161 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | ||||||| | ||||||| | | || | | |||||||||||| |||||| Sbjct 873162 CTCCGCCGAC-CTCCCCACTGGCTCCACACCCTCACCCCCGACGAGCGCCACTTCATCTC 873220 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||||| || || ||||||||| ||| |||||||| ||||||||| ||| || Sbjct 873221 CCACGTCCTTGC--TTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCACCC 873278 Query 1455953 GCTTTATGAAAGAGGTCCA-ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 |||| ||| || ||||| |||||| ||||| || || ||||| |||||||| ||| Sbjct 873279 GCTTCATGTCCGACGTCCAGATTGCC-GAGGCTCGCGCCTTCTACGGCTTCCAGATAGCC 873337 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 ||||||| ||||||||| || | || || || || | || ||||| |||| ||||| Sbjct 873338 ATCGAAA-CATCCACTCCGAGATGTATTCTCTTTTGCTGGAATCCTACATCAAAGACCCT 873396 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | ||| ||| ||| ||| ||||| || |||| ||||| ||| ||||| ||| |||||| Sbjct 873397 GACGAAAAG-ACCGCCT-TTTCGTGCTGTCGAGACGGTCCCGGCGGTGGCGAAGAAGGCC 873454 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG-ACACTTT-GCCGAGCGGCTCGT 1456189 | |||||| | |||||| | | ||||| || | || || ||||| ||||| Sbjct 873455 CAGTGGGCGCTCCGGTGGATTGA-------GTCCTCGGACTCCTTCGCGGAGCGCCTCGT 873507 Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | ||| | || || ||||| ||||| ||||| ||| ||||| ||||||| ||||| Sbjct 873508 GGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCCTTCTGTTCCATCTTCTGGCT 873567 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||||||||||| || || Sbjct 873568 CAAGAAGCGCGGCCTCATGCCGGGGCT 873594 Score = 132 bits (146), Expect = 7e-25 Identities = 209/292 (72%), Gaps = 12/292 (4%) Strand=Plus/Plus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTC----GACCGA 1456509 ||||| ||||| ||||| || |||||| | | ||| | |||||| | ||||| Sbjct 873635 CACTGCGACTTCGCCTGCCTCCTCTACTCCCTCCTCAACCACAAGCTCCCTGAGGACCG- 873693 Query 1456510 CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 | | |||| ||||||| ||| || ||||| ||||||| ||||| ||| |||| | Sbjct 873694 CAT---CAAGTCAATCATCGCCGACGCTGTCGACATCGAGAGGGAGTTCGTCTGCGACGC 873750 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 | ||||||||||||| | || ||||| | | ||| || | ||||| || || Sbjct 873751 GTTGCCGGTGGCGCTGGTGGGGATGAATGGGGATT-TGATGAGCGAATACATCGAGTTC- 873808 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 || || || || || | | |||| | || ||||| |||| ||| || | ||||| || Sbjct 873809 GTGGCGGATCGGCTCTTGGGGGCGTTGGG-TGCGG-GAAGTTGTACGGGGCAGCCAATCC 873866 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||| |||||||||||||| |||||| |||| ||||| |||||||||||| Sbjct 873867 GTTCGATTGGATGGAGTTGATATCGCTCCAGGGGAAGACGAACTTTTTCGAG 873918 >seq5 Length=3255894 Score = 127 bits (140), Expect = 3e-23 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || |||||||| ||||| || | | || ||| || | |||| || Sbjct 1518186 ATCTTCAAGGTCCTGAAGCAGGTCCACCCG-GA--CATCGGA--ATC-TCGAGCAAGGCC 1518133 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | |||||| Sbjct 1518132 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCC 1518073 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || |||| ||||||| ||| ||| | | || |||||||||||| |||| Sbjct 1518072 CGTCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTC 1518013 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 1518012 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 1517961 Score = 89.7 bits (98), Expect = 7e-12 Identities = 164/234 (70%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||| || |||||||| ||||| || | | ||| ||| || | |||| || Sbjct 1432403 ATCTTTAAGGTCCTGAAGCAGGTCCACCCG-GA--CATCGGG--ATC-TCGAGCAAGGCC 1432350 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | ||||| || Sbjct 1432349 ATGGGCATCATGAACTCTTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGC--GT 1432292 Query 725031 C--GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 | | || || |||| ||||||| || || | | || || || |||||| | | Sbjct 1432291 CCAGGCTTGCCCGCTACAACAAGAAGCCTACCATTACCTCCCGGGAAATTCAGACCTCTG 1432232 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | |||||| || | | ||| || || || | |||||||||||| |||||||||| Sbjct 1432231 TCCGCCTGGTCCTCCCCGGTGAGCTTGCGAAGCACGCCGTCTCGGAGGGCACCA 1432178 >seq1006 Length=252064 Score = 104 bits (114), Expect = 3e-16 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||| | |||||||| || || || | | || |||| |||| |||| || Sbjct 209827 ATCTTCAAGGTGTTGAAGCAGGTCCATCCG-GA--CATCGG--CATC-TCCAGCAAGGCC 209880 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| | || ||| | ||||| Sbjct 209881 ATGGGCATCATGAACTCCTTCATCAACGACATCTTTGAGAAGCTCGCCCAGGAGGCGTCC 209940 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| |||| ||||||| || ||| | | || |||||||||||| |||| Sbjct 209941 CGCTTGGCCCGCTACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACCTCCGTT 210000 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | ||||| || || | |||||||||||| ||||| |||| Sbjct 210001 CGCCTCGTCCTCCCTGGCGAGCTAGCTAAGCACGCCGTCTCGGAGGGTACCA 210052 >seq43 Length=1757131 Score = 100 bits (110), Expect = 4e-15 Identities = 164/232 (71%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||| | |||||||| |||| || | | ||| ||| |||| |||| | Sbjct 20851 ATCTTCAAGGTGTTGAAGCAGGTCCACCG--GA--CATCGGG--ATC-TCCAGCAAGGCT 20903 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || ||||||| || | || ||| | ||||| Sbjct 20904 ATGGGCATCATGAATTCCTTCATCAACGATATCTTTGAGAAGCTCGCCCAGGAGGCTTCC 20963 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| || ||| | | || ||||| |||||| |||| Sbjct 20964 CGCCTCGCCCGCTACAACAAGAAGCCGACCATCACCTCCCGGGAGATTCAGACCTCCGTC 21023 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| |||||||||||||||||| |||| Sbjct 21024 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGTACCA 21075 >seq16 Length=2636605 Score = 100 bits (110), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| | |||||||| ||||| | || |||| || | |||| || Sbjct 470235 ATCTTCAAGGTCTTGAAGCAGGTCCACCCGGATATCGG-----CATC-TCGAGCAAGGCC 470288 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | ||||| Sbjct 470289 ATGGGTATCATGAACTCCTTCATCAACGACATCTTCGAGAAACTCGCCCAAGAGGCTTCC 470348 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || |||| ||||||| || ||| | | || ||||||||||| |||| Sbjct 470349 CGTCTCGCCCGCTACAACAAGAAGCCGACCATCACCTCTCGGGAGATCCAGACGTCCGTC 470408 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | | ||||||||| || | ||||||||||||||||||||||| Sbjct 470409 CGTCTCGTTCTCCCCGGCGAACTCGCGAAGCACGCCGTCTCCGAGGGCACCA 470460 >seq978 Length=280726 Score = 95.1 bits (104), Expect = 2e-13 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| || ||| | |||||||| ||||| || | | ||| ||| || | |||| || Sbjct 270150 ATCTTTAAAGTGTTGAAGCAGGTCCACCCG-GA--CATCGGG--ATC-TCGAGCAAGGCC 270203 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| || |||||||| || |||||||||| |||| ||| ||| ||||| Sbjct 270204 ATGGGCATTATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCGCAG-GAGGCTTC 270262 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||||| || | ||||||| || ||| | | || |||||||||||| |||| Sbjct 270263 CAAGCTGGCTCGATACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACCTCCGT 270322 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || || | ||||||||||||||||||||||| Sbjct 270323 CCGCCTCGTCCTCCCCGGCGAGCTCGCGAAGCACGCCGTCTCCGAGGGCACCA 270375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175230534622472