Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq2728 206 3e-48 seq916 145 9e-30 seq518 114 1e-20 seq639 100 3e-16 seq2774 93.3 5e-14 seq291 91.5 2e-13 seq85 91.5 2e-13 >seq2728 Length=129770 Score = 206 bits (228), Expect = 3e-48 Identities = 246/334 (74%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 159947 TACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTG 160006 || |||| | || ||| | || || || ||||||||||| ||||| || || || || | Sbjct 96476 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 96535 Query 160007 AAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTT 160066 ||||||| || ||||| ||||| || ||| | || ||||||| |||||||||| Sbjct 96536 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 96595 Query 160067 ATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACA 160126 |||| ||||||||||| |||||||| ||||| || ||||| || ||||| ||||| || | Sbjct 96596 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 96655 Query 160127 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 160186 | | ||| | ||||| || ||| | ||||| || || | | | |||||| || Sbjct 96656 AATGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTC 96715 Query 160187 TTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTA 160246 || | | | || || ||| | ||||| |||||||| || ||||| || || ||| Sbjct 96716 TTCGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTC 96775 Query 160247 GAGCAGCAGAAGATCCTGAATTTGAGACCTTCTA 160280 | ||||| |||||||||||||||||||| ||||| Sbjct 96776 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq916 Length=298367 Score = 145 bits (160), Expect = 9e-30 Identities = 228/324 (70%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 159667 TGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTT 159726 ||| | ||||||||||||||||||| ||| || | |||||||| |||| |||| Sbjct 270196 TGGGCTTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTC 270255 Query 159727 GAAATTGCTCGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATT 159786 ||| |||| | | || | | | ||| ||||| || || |||| || ||| ||| Sbjct 270256 GAACCTGCTTGATTTGTGCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCCAATT 270315 Query 159787 GCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCA 159846 ||| |||| || |||||| | || |||||||||||||| ||| |||||||||||| Sbjct 270316 GCTATTTT-GTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCA 270374 Query 159847 CCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAAC 159906 || | || || ||||| || ||| ||||| | | ||| | || || || || || Sbjct 270375 CCCA-----GGTGTTGCAGCTATATTTTGATTCATCCTCTTCTTCCAAGGGTTTCATAAT 270429 Query 159907 TGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTG 159966 |||| | ||||| || ||| ||| |||||||| || || ||||| || ||| | Sbjct 270430 TGGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGGAGTATTAGGTACTGCTCTGCTA 270489 Query 159967 TGTGCAATCCATGGTGCTACTGTA 159990 || | || |||||||||| |||| Sbjct 270490 TGCACTATTCATGGTGCTA-TGTA 270512 >seq518 Length=568097 Score = 114 bits (126), Expect = 1e-20 Identities = 240/353 (68%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 158303 GAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACC 158362 ||||| ||| ||| ||||| || | ||||||| ||| |||||| || || || Sbjct 409517 GAAACCACTAAAAATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACT 409458 Query 158363 TACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 158422 | || || || | |||||||| || || | |||| |||| ||||| ||| ||| Sbjct 409457 CATAATATTGTAGGTGCCCATGGTTATTTGGCAGATTTG-TCTTACAATATGCTAGTTTC 409399 Query 158423 AACAACTCCCGTTCCTTG-CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 158481 ||||| || ||||||| || || || | ||||| |||| || || || |||| ||| Sbjct 409398 AACAATTCTTGTTCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTT 409339 Query 158482 CACCGCCCTTGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 158539 || || || ||| ||| || ||| | |||||||| || |||||||| | |||||| Sbjct 409338 AACTGC--TTTACGTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAA 409281 Query 158540 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCT 158599 | | | || ||||||| ||| | | || || | | ||| | | || | | | Sbjct 409280 ACTAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGT 409221 Query 158600 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGA 158652 ||| ||||||||| ||| |||| |||| || ||||||||||| || || Sbjct 409220 AAGTTTGATATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGA 409168 >seq639 Length=439984 Score = 100 bits (110), Expect = 3e-16 Identities = 96/122 (79%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 160255 GAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGT 160314 ||||||||| |||||||||| ||||||| ||| || || || || || |||| ||||| Sbjct 425125 GAAGATCCTAAATTTGAGACTTTCTACATCAAAAATATTCTCTTAAACGAAGATATTCGT 425066 Query 160315 GCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTA 160374 |||||||||| || ||||| || |||| |||| |||| ||||||||| | || ||| Sbjct 425065 GCTTGGATGGTGGCTCAGGATCAGCCTCATG-AAACCTTATATTCCCTGAGAAGGTTCTA 425007 Query 160375 CC 160376 || Sbjct 425006 CC 425005 >seq2774 Length=74964 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 160255 GAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGT 160314 ||||||| |||||||||||| ||||| ||||| || ||||| || || ||||| ||| | Sbjct 26830 GAAGATCTTGAATTTGAGACTTTCTATACCAAAAATATCCTCTTAAACGAAGGTATTCAT 26889 Query 160315 GCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCC 160360 |||||||||| || | | ||||| |||||||| |||| |||| Sbjct 26890 GCTTGGATGGTGGCTCCGAAGCAACCTCATGAAAATCTTATATTCC 26935 >seq291 Length=752601 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 159835 TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAG 159894 ||||||||||| || | ||| |||||||| || ||| ||||| | | ||| | || Sbjct 473230 TGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCTTCTTCCAA 473171 Query 159895 GGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 159954 || || || || |||| | ||||| || |||||||||||| ||| ||| || ||||| Sbjct 473170 GGGTTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGGAGTATTAGGT 473111 Query 159955 GGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGA 159992 | | ||| | || || || ||||||||||| |||| Sbjct 473110 GCTACTCTGCTATGCGCTATTCATGGTGCTACCATAGA 473073 >seq85 Length=1476802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 158182 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158241 ||||||| |||||||||||||||||||| || || || ||| | ||||| ||||| || Sbjct 645544 ATTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGT 645603 Query 158242 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 |||||| || || || ||| |||||||||||| Sbjct 645604 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 645636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572832352123200