Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq2728 170 2e-37 seq518 136 4e-27 seq2163 102 9e-17 seq85 82.4 9e-11 >seq2728 Length=129770 Score = 170 bits (188), Expect = 2e-37 Identities = 238/334 (71%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 162256 TACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACG 162315 || |||| | || || |||| |||||||| || | || || |||||||| |||| || Sbjct 96476 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 96535 Query 162316 AGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTT 162375 | ||||| || ||||| || || || ||| | | || || | |||||||||| Sbjct 96536 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 96595 Query 162376 ATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACA 162435 |||| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || | Sbjct 96596 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 96655 Query 162436 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 162495 | | ||| | ||||| || ||| | ||||| || || | | | |||||| || Sbjct 96656 AATGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTC 96715 Query 162496 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCA 162555 || | | | || || ||||| ||||| |||||||| || ||||| || || || Sbjct 96716 TTCGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTC 96775 Query 162556 GAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTA 162589 | ||||| ||||||||||| ||||| || ||||| Sbjct 96776 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 136 bits (150), Expect = 4e-27 Identities = 244/353 (69%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 160587 GAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACC 160646 ||||| ||| ||| ||||| || | ||||||| ||| |||||| ||| || || Sbjct 409517 GAAACCACTAAAAATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACT 409458 Query 160647 TACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 160706 | || || || | ||||||||||| || | |||| |||| |||||||| ||| Sbjct 409457 CATAATATTGTAGGTGCCCATGGTTATTTGGCAGATTTG-TCTTACAATATGCTAGTTTC 409399 Query 160707 AACAACTCCCGTTCACTTCAC--TTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGT 160764 ||||| || |||| ||| || || || |||| || |||| || ||| || |||| || Sbjct 409398 AACAATTCTTGTTC-CTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGT 409340 Query 160765 TCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 160824 | |||||| | || | || || ||| | |||||||| || |||||||| | |||||| Sbjct 409339 TAACTGCTTTACGTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAA 409280 Query 160825 CCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTG 160884 | | | || ||| ||| ||| | | || || | | || | | |||| || | Sbjct 409279 CTAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTA 409220 Query 160885 GTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 160937 ||| ||||||||| ||| |||| |||| || ||||||||||| || ||| Sbjct 409219 AGTTTGATATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 409167 >seq2163 Length=162151 Score = 102 bits (112), Expect = 9e-17 Identities = 131/177 (74%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 161716 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 161775 |||| |||||| ||||||| ||||||||||| || | || |||| ||||||| | | Sbjct 135419 GGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTTCCTTATGCTTATTTCG 135360 Query 161776 CTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCG 161835 || | || |||||| ||| || | |||||| | ||| |||||||||||||| | | Sbjct 135359 CTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGGTATACCCATGGATTGG 135300 Query 161836 CTAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACAGCGTCAGTTAGCACTCCAGC 161890 | ||||||||| | | ||| ||||| |||||| || || |||| |||||| || Sbjct 135299 CCAGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGTAGTTTCCACTCCTGC 135245 >seq85 Length=1476802 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 160466 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGT 160525 ||||||| |||||||| |||||||||||||| || |||||| | || || ||||| || Sbjct 645544 ATTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGT 645603 Query 160526 ATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 160558 |||||| || || | ||| ||||||||| || Sbjct 645604 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 645636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559316873887200