Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq2728 190 3e-43 seq518 113 6e-20 seq85 102 1e-16 >seq2728 Length=129770 Score = 190 bits (210), Expect = 3e-43 Identities = 240/330 (73%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 182940 GCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAA 182999 || ||||| | ||||| ||||||| || ||||| ||||| || | |||||||| || Sbjct 96487 GCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGAC 96546 Query 183000 CAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTT 183059 ||||| ||||| || || | | ||||| | || ||||| ||||| ||||| Sbjct 96547 GGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTC 96606 Query 183060 ACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTG 183119 || || || || |||||||| |||||||| |||||||| ||| |||||| ||||||| Sbjct 96607 ACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTA 96666 Query 183120 CACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATT 183179 || ||||||||| | ||||| || || | | | | ||| | | || || || | | Sbjct 96667 CATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGTC 96726 Query 183180 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAA 183239 || || ||||| || || ||||||||||| || || ||||| ||| | ||||| ||| Sbjct 96727 GGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAA 96786 Query 183240 GATCCTGAGTTCGAGACGTTCTACACAAAG 183269 |||||||| || ||||| ||||| ||||| Sbjct 96787 GATCCTGAATTTGAGACTTTCTAATCAAAG 96816 >seq518 Length=568097 Score = 113 bits (124), Expect = 6e-20 Identities = 233/344 (68%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 181501 ACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCAC 181560 ||||||| || ||||||| | ||||||||||||| || ||||||| | | | Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT 409565 Query 181561 TGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAA 181620 | |||||||| || || ||||| |||| || | | | | || || || ||| ||| Sbjct 409564 TATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAA 409505 Query 181621 CTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCG 181680 |||||| || | ||||| | ||| | |||| || || || | || || || | Sbjct 409504 ATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAG 409445 Query 181681 CCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTT 181740 ||||| ||||| ||||| | || |||| ||||||||| |||||||| || ||| Sbjct 409444 GTGCCCATGGTTA-TTTGGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGTT 409386 Query 181741 CACT-GCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGC 181799 | | || || || | || || |||| || ||| || |||| ||| || || | | Sbjct 409385 CCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACGT 409326 Query 181800 GTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCA 181843 | || || ||| | || ||||| ||||| ||||| | |||||| Sbjct 409325 ATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCA 409282 >seq85 Length=1476802 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 181488 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTA 181547 |||||| || |||||||| || |||||||| || |||||||||||||| || |||||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 181548 TTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTAC 181591 || || || || || |||||||| ||||| ||||| ||||| || Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 645648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614412041143680