Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2728 178 2e-39 seq916 93.3 6e-14 >seq2728 Length=129770 Score = 178 bits (196), Expect = 2e-39 Identities = 246/342 (72%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 176419 TACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATG 176478 || |||| | || || |||| || || ||||| | ||| || |||||||| ||| | Sbjct 96476 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 96535 Query 176479 AAGATGGAGAACAGAACAAC-ACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACC 176537 ||||||| || | | ||| || ||| ||| || | | || || | |||||||| Sbjct 96536 AAGATGGTGA-CGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACT 96594 Query 176538 TATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAAT 176597 ||||| ||||| ||||| |||||||| ||||| |||||||| |||||||| ||| ||| Sbjct 96595 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 96654 Query 176598 AAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGT 176657 || ||||| | || ||||||||| | ||||| || || | | | | ||| | | Sbjct 96655 AAATGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCT 96714 Query 176658 ATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATT 176717 || | | | || || ||||| || || ||||||||||| || || |||||| ||| Sbjct 96715 CTTCGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATT 96774 Query 176718 AGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAG 176759 | ||||| ||||||||||| ||||| |||||||| ||||| Sbjct 96775 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTAATCAAAG 96816 >seq916 Length=298367 Score = 93.3 bits (102), Expect = 6e-14 Identities = 218/321 (68%), Gaps = 20/321 (6%) Strand=Plus/Plus Query 176139 TGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTT 176198 ||| | ||||||||||||||||||| ||| || | || || | | ||| | || Sbjct 270196 TGGGCTTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTC 270255 Query 176199 GAACTGGCAAGACT----CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCC 176254 |||| || || | || | || | | || || || || |||||| || ||| Sbjct 270256 GAACCTGCTTGATTTGTGCAATTGT----GACTTTATAATGCAATCGCATTCTTTGTTCC 270311 Query 176255 TATCGCTGTATTTGTCAGTGTGTTTCTTC-TATACCCACTAGGTCAATCTTCCTGGTTCT 176313 || ||| | ||||| ||| || |||| | || ||||| ||||||||| ||||||| Sbjct 270312 AATTGCTAT-TTTGTTTCTGTATT-CTTCATTTATCCACTGGGTCAATCTAGTTGGTTCT 270369 Query 176314 TTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTC--AGGGTTT 176371 |||| ||| ||||| ||||| || ||| ||||| | | |||||| ||||||| Sbjct 270370 TTGCACCC-----AGGTGTTGCAGCTATATTTTGATTCATCCT-CTTCTTCCAAGGGTTT 270423 Query 176372 CCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGC 176431 || || |||| ||||||| || ||| ||| |||||||| || || ||||| || Sbjct 270424 -CATAATTGGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGGAGTATTAGGTACTGC 270482 Query 176432 ACTACTATCTGCAATCCATGG 176452 || |||| | || ||||| Sbjct 270483 TCTGCTATGCACTATTCATGG 270503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729685475045280