Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq2728 174 2e-38 seq85 107 2e-18 seq518 95.1 1e-14 seq172 84.2 3e-11 seq916 82.4 9e-11 >seq2728 Length=129770 Score = 174 bits (192), Expect = 2e-38 Identities = 239/334 (72%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 179791 TACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATG 179850 || |||| | || ||||| | ||||| ||||| | ||| ||||| ||||| || | | Sbjct 96476 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 96535 Query 179851 AAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTT 179910 ||||||| || |||||||| || || ||| | | || || | |||||||||| Sbjct 96536 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 96595 Query 179911 ATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACA 179970 |||| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || | Sbjct 96596 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 96655 Query 179971 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 180030 | | ||| | ||||| || ||| | ||||| || || | | | |||||| || Sbjct 96656 AATGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTC 96715 Query 180031 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCA 180090 || | | | || || ||||| ||||| |||||||| || ||||| || || || Sbjct 96716 TTCGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTC 96775 Query 180091 GAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTA 180124 | ||||| |||||||| || |||||||| ||||| Sbjct 96776 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq85 Length=1476802 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415 |||||| ||||||||||| || ||||| || || |||||||||||||| || |||||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTAC 178459 ||||| || || || |||||||| ||||| ||||| ||||| || Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 645648 >seq518 Length=568097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 231/345 (67%), Gaps = 4/345 (1%) Strand=Plus/Minus Query 178369 ACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTAT-TCGGTGGTTCA 178427 ||||||| || |||| || | ||||||||||||| || ||||||| | | ||| Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTC- 409566 Query 178428 CTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAA 178487 | |||||||| || || ||||| |||| || | | | | | ||||| ||| || Sbjct 409565 TTATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 409506 Query 178488 ACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTT 178547 | || || || | ||||||| ||| | |||| || || || | || || || Sbjct 409505 AATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTA 409446 Query 178548 GCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGT 178607 | || ||||| || || || | || |||| ||||||||| |||||||| || || Sbjct 409445 GGTGCCCATGGTTA-TTTGGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGT 409387 Query 178608 TCACT-GCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGG 178666 || | || || || | || || |||| || ||| || |||| ||| || || | | Sbjct 409386 TCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACG 409327 Query 178667 CGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCA 178711 | || || ||| | || ||||| ||||| ||||| | |||||| Sbjct 409326 TATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCA 409282 >seq172 Length=1158115 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 178323 GGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATG 178382 || || | || ||| |||||||| || ||| ||||||||||||||||||| || ||| Sbjct 764633 GGAATATTTGATACTTTCAACTAGAT---TGTATTCCAAGCAGAACACAACACCCTTATG 764577 Query 178383 CACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATG 178442 | | || |||||||||| ||| | |||| |||| || || || || ||||| ||| Sbjct 764576 AATCAATTTCACATGTTGGATGTAACTAGTGTTTTCGATGACTCGCTATTTAGTGCTATG 764517 Query 178443 CACGGTTCTT 178452 || | ||||| Sbjct 764516 CATGTTTCTT 764507 >seq916 Length=298367 Score = 82.4 bits (90), Expect = 9e-11 Identities = 214/323 (66%), Gaps = 15/323 (5%) Strand=Plus/Plus Query 179516 TTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACT 179575 ||| || ||||||||||||| ||| || | ||||| | | | |||| |||| Sbjct 270201 TTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTCGAACC 270260 Query 179576 TGCTCGCCTGATTGGT----ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTG 179631 |||| ||||| || | ||| ||| ||||| || || || | || ||| |||| Sbjct 270261 TGCT----TGATTTGTGCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCCAATTG 270316 Query 179632 CTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGC 179691 || | || || ||| ||| |||| ||||| |||| || || |||||| || || | Sbjct 270317 CTAT-TTTGTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCAC 270375 Query 179692 CGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACT 179751 | ||||| || || || || | ||| | || ||| | || || || || || | Sbjct 270376 C-----CAGGTGTTGCAGCTATATTTTGATTCATCCTCTTCTTCCAAGGGTTTCATAATT 270430 Query 179752 GGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCA 179811 ||| | | ||||| || ||| ||| |||||||| || || |||| || ||||| Sbjct 270431 GGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGGAGTATTAGGTACTGCTCTGCTAT 270490 Query 179812 GTGCTATCCATGGAGTTACTGTA 179834 | |||| ||||| | || |||| Sbjct 270491 GCACTATTCATGGTGCTA-TGTA 270512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605806920089280