Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq2728 161 1e-34 seq518 125 8e-24 seq2163 107 2e-18 seq85 91.5 2e-13 seq27 86.0 7e-12 >seq2728 Length=129770 Score = 161 bits (178), Expect = 1e-34 Identities = 236/334 (71%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 160467 TACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATG 160526 || |||| | || ||||| | || || ||||| | ||| ||||| || || | | | Sbjct 96476 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 96535 Query 160527 AAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTT 160586 ||||||| || |||||||| || || ||| | | || || | |||||||||| Sbjct 96536 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 96595 Query 160587 ATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACA 160646 |||| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || | Sbjct 96596 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 96655 Query 160647 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTA 160706 | | ||| | ||||| || ||| | ||||| || || | | | | |||| | Sbjct 96656 AATGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTC 96715 Query 160707 TTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTA 160766 || | | | || || ||||| || || |||||||| || ||||| ||||| ||| Sbjct 96716 TTCGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTC 96775 Query 160767 GAGCAGCAGAAGATCCAGAATTTGAGACCTTCTA 160800 | ||||| |||||||| ||||||||||| ||||| Sbjct 96776 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 125 bits (138), Expect = 8e-24 Identities = 245/355 (69%), Gaps = 8/355 (2%) Strand=Plus/Minus Query 159006 GAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA 159065 ||||| ||| ||| ||||| || | ||||| | ||| | |||| || ||||| Sbjct 409517 GAAACCACTAAAAATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACT 409458 Query 159066 TATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 159125 ||||||| || | ||||||||||| || | |||| |||| ||||| ||| ||| Sbjct 409457 CATAATATTGTAGGTGCCCATGGTTATTTGGCAGATTTG-TCTTACAATATGCTAGTTTC 409399 Query 159126 AACAACTCCCGTTCCTTG-CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 159184 ||||| || ||||||| || || || | ||||| |||| || || || |||| ||| Sbjct 409398 AACAATTCTTGTTCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTT 409339 Query 159185 CACCGCCCTTGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 159242 || || || ||| ||| || ||| | |||||||| || |||||||| | |||||| Sbjct 409338 AACTGC--TTTACGTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAA 409281 Query 159243 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGC- 159301 | | | || ||||||| ||| | | || || | | ||| | | || | || Sbjct 409280 ACTAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGT 409221 Query 159302 AGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 159356 | || || ||||||||| ||| |||| |||| || ||||||||||| || ||| Sbjct 409220 AAGTTTGA-TATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 409167 >seq2163 Length=162151 Score = 107 bits (118), Expect = 2e-18 Identities = 132/177 (75%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 159927 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 159986 |||| |||||| ||||||| ||||||||||| || | || |||| ||||||| | | Sbjct 135419 GGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTTCCTTATGCTTATTTCG 135360 Query 159987 CTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCG 160046 || | || |||||| ||| || | |||||| | ||| ||||||||||||||| | | Sbjct 135359 CTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGGTATACCCATGGATTGG 135300 Query 160047 CTAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACAGCGTCAGTTAGCACTCCAGC 160101 | ||||||||| | | ||| ||||| |||||| || || |||| |||||| || Sbjct 135299 CCAGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGTAGTTTCCACTCCTGC 135245 >seq85 Length=1476802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 158885 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158944 ||||||| |||||||||||||||||||| || || || ||| | ||||| ||||| || Sbjct 645544 ATTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGT 645603 Query 158945 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 |||||| || || || ||| |||||||||||| Sbjct 645604 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 645636 >seq27 Length=2012675 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095 ||||||| ||||| ||||| |||||||| ||||||||||| || || ||| |||| || Sbjct 1262127 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCAT-GTTATTTT 1262185 Query 159096 GGTCGTTTGATCTTCCAATACGCT 159119 || || |||||||||||||| ||| Sbjct 1262186 GGCCGATTGATCTTCCAATATGCT 1262209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552288825204480