Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2728 150 2e-31 seq916 120 4e-22 seq291 95.1 1e-14 seq518 89.7 6e-13 seq85 87.8 2e-12 >seq2728 Length=129770 Score = 150 bits (166), Expect = 2e-31 Identities = 227/321 (71%), Gaps = 4/321 (1%) Strand=Plus/Plus Query 180604 TGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTAT--GAAGATGGAGAACA 180661 |||||| || || ||||| | || || |||| | ||| ||| |||||||| || Sbjct 96491 TGCTATGCGCTATTCATGGTGCTACCGT--AGAAAATACTTTATTCGAAGATGGTGACGG 96548 Query 180662 AGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCAC 180721 ||||| || || || ||| | |||| |||| || || ||||| || |||||||| Sbjct 96549 TGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCAC 96608 Query 180722 TGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCA 180781 ||| |||||||| ||||| || ||||| || |||| ||||| || || | ||| | || Sbjct 96609 TGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACA 96668 Query 180782 TTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGG 180841 ||| || ||| | ||||| || || | | | |||||| || || | | | || Sbjct 96669 TTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGTCGG 96728 Query 180842 TCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGA 180901 || ||||| ||||| |||||||| || ||||| ||||| || | ||||| ||||| Sbjct 96729 CCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGA 96788 Query 180902 TCCTGAGTTCGAGACGTTCTA 180922 |||||| || ||||| ||||| Sbjct 96789 TCCTGAATTTGAGACTTTCTA 96809 >seq916 Length=298367 Score = 120 bits (132), Expect = 4e-22 Identities = 216/311 (69%), Gaps = 10/311 (3%) Strand=Plus/Plus Query 180314 TTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACT 180373 ||| || ||||||||||||| ||| |||| || |||| |||| | || |||| Sbjct 270201 TTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTCGAACC 270260 Query 180374 GGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGT 180433 || | || | | | | ||| ||||| || ||||||| || ||| || ||| | Sbjct 270261 TGCTTGATTTGTGCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCCAATTGCTAT 270320 Query 180434 ATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTC 180493 ||||| ||||| |||| || ||||||||||| || |||||||||||||| ||| Sbjct 270321 -TTTGTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCACCC-- 270377 Query 180494 TTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTC--AGGGTTTCCACAACTGG 180551 || || ||||| || ||| ||||| | ||| |||||| ||||||| || || ||| Sbjct 270378 ---AGGTGTTGCAGCTATATTTTGATTCATCCTC-TTCTTCCAAGGGTTT-CATAATTGG 270432 Query 180552 ACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCA 180611 | | ||||| || ||| ||| |||||||| || || ||||| || |||||| Sbjct 270433 ATGTTGAACCCATTTCATTTGACTGGAGTTGCCGGAGTATTAGGTACTGCTCTGCTATGC 270492 Query 180612 GCAATCCATGG 180622 | || ||||| Sbjct 270493 ACTATTCATGG 270503 >seq291 Length=752601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/150 (75%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 180475 GTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTC 180534 ||||||||||||| ||| |||| |||||||| || ||| ||||| | ||||| |||| Sbjct 473232 GTTGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCTT-CTTC 473174 Query 180535 --AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 180592 |||||||| | || |||| | ||||| || |||||||||||| ||| ||| || | Sbjct 473173 CAAGGGTTTC-ATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGGAGTATT 473115 Query 180593 AGGTGGAGCATTGCTATCAGCAATCCATGG 180622 ||||| | |||||| || || ||||| Sbjct 473114 AGGTGCTACTCTGCTATGCGCTATTCATGG 473085 >seq518 Length=568097 Score = 89.7 bits (98), Expect = 6e-13 Identities = 219/325 (67%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 179518 GGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 179577 ||||||| ||| | |||| || || || |||| || || | || ||||| || || Sbjct 409487 GGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAGGTGCCCATGGTTATTTG 409428 Query 179578 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTG-CACTTCTTCCT 179636 | |||| |||| |||||||| || ||||| || | || || || || || | Sbjct 409427 GCAGATTTG-TCTTACAATATGCTAGTTTCAACAATTCTTGTTCCTTAACATTTATTTTT 409369 Query 179637 TGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCA--ACCATGGCG 179694 ||||| |||| | || || |||| ||| |||||| | ||| ||| || ||| | Sbjct 409368 GGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTA--CGTATCAGTACTATGACT 409311 Query 179695 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTT 179754 |||||||| || |||||||| | |||||| | | | ||| ||| || ||| || Sbjct 409310 TTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAATCAGGGTTATGTTATT 409251 Query 179755 AACACATGGGCGGACGTATTGAACCGTGC-AGGTTTGGGTATGGAAGTTATGCATGAGCG 179813 | || | | | || | | || | || | ||||| ||||||||| ||| |||| | Sbjct 409250 ACCATCTAGACTGATATCATCAATCATGGTAAGTTTGA-TATGGAAGTAATGTATGAATG 409192 Query 179814 TAACGCACACAACTTCCCACTCGAC 179838 ||| || ||||||||||| || ||| Sbjct 409191 TAATGCTCACAACTTCCCTCTAGAC 409167 >seq85 Length=1476802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 179367 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGT 179426 ||||||| |||||||||||||||||||| || || || ||| | ||||| ||||| || Sbjct 645544 ATTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGT 645603 Query 179427 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 |||||| || || || ||| ||||||||| || Sbjct 645604 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 645636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610125475265280