Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq94 125 1e-23 seq859 114 2e-20 seq28 109 8e-19 seq2335 107 3e-18 >seq94 Length=1461416 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | |||| | || | |||||| |||| ||| || Sbjct 1163987 TCCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATTGGAACAATGCC 1163928 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||| ||| ||||||||| ||| | || || |||||| || || Sbjct 1163927 ATTAGAAGTTCCATTTGTCCCACGAATATAACTGCCTGTGGCACGTATATTATGAACTGA 1163868 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || || || | |||||| ||||| ||||||||||| Sbjct 1163867 AACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCTTCAAAGTGTCATATAT 1163808 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| || ||||||||| ||||| | ||| || ||||| Sbjct 1163807 TCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCT 1163766 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || || ||||||||||| ||||| || ||||||||||| || ||| | || || Sbjct 1163656 AGTGCCTGCGTTAAATAATGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 1163597 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||| | | | || || ||||| || || ||||| | || || | ||||| Sbjct 1163596 ATATGTTCTGAGAACAGAATCAATATCATTCTTGTGGATTCCAACAGCAACTCTCATCAG 1163537 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| ||| | | |||||| ||||| ||| | || || Sbjct 1163536 CATGTGTTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAAGAGGTAAGATCTCTCAAG 1163477 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||| ||||| ||||| |||| || |||||| || || ||||| || Sbjct 1163476 AGTCTTAAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 1163429 >seq859 Length=348630 Score = 114 bits (126), Expect = 2e-20 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 128441 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 128382 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| ||||||||||| |||||||| || || | |||| ||| | ||||| |||| Sbjct 128381 CCCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATAG-AGCAGAAGGAGCCAGAGAAGA 128323 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 |||| || || || || ||||||||||| || | ||| Sbjct 128322 AGATCCCCTCAACGGCGGCAAATGCAACGAGGCGCTC 128286 >seq28 Length=2151574 Score = 109 bits (120), Expect = 8e-19 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 69748 TTTCCTCCC--TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAA 69805 || |||||| ||||| | || | ||||| | |||| | || | ||||||||| | || Sbjct 705658 TTCCCTCCCCTTGATCAACATAACGAGCAGTATCATTAAACAC-CGCAGCATCGGCACAA 705600 Query 69806 TACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAA 69865 | ||||| || | |||||||| ||| ||||||||| ||| | || || |||||| || Sbjct 705599 TGCCATTTGAAGTTCCATTTGTCCCACGAATATAACTACCTGTGGCTCGTATATTATGAA 705540 Query 69866 TAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCAT 69925 || | ||| ||||||||||| || || | |||||| |||| ||||||| Sbjct 705539 CTGAAACACCAATTCCTCCTGCAGACTTGCTTATGACAGCACATTCCTTCAGAGTGTCAT 705480 Query 69926 ATATACCCTCTATGCTATCATCTATCATG 69954 | || ||||| || ||||||||| ||||| Sbjct 705479 AGATTCCCTCAATACTATCATCTTTCATG 705451 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||||| ||||||||| || || ||||||||||| || ||| | || || Sbjct 705331 AGTGCCTGCATTAA-TAATGTAGG-GAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 705274 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||||| | | | || || ||||| || || ||||| | || || | |||||| Sbjct 705273 GTATGTTCTGAGAACAGAATCAATATCATCCTTGTGGATTCCAACAGCAACTCTCATCAA 705214 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | ||||| ||| | | |||||| || || ||| | || || Sbjct 705213 CATGTGTTGTGGCCTCTCTACTACTTTTCCAGAAACTTTCAAGAGATAAGATCTCTCAAG 705154 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||| ||||| |||||||| | || |||||| || || ||||| || Sbjct 705153 AGTCTTAAAACCAAAATAATCATAATCAAAGTCCCTGTCATAAATTAT 705106 >seq2335 Length=105124 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | |||| | || |||| ||| |||| || ||| Sbjct 21880 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACGATGCCA 21939 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||| ||| |||||||| || |||| |||||||| | |||| Sbjct 21940 TTGGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 21999 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || | |||||| || ||| || | |||||| || || || |||||||| Sbjct 22000 ATGCCAACTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTTAAAGTATCATATATG 22059 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| || | || |||||| Sbjct 22060 CCCTCAATGCTATCATCTTTCATGCAAACCAAGAAGCAGCTA 22101 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || | |||||| || ||||||||||| ||||||||||| | ||| | || || Sbjct 22200 AGTCCCTGAATTAAACAAGGTAGGAGATGCATGAGTGAACCACCGCTGAGACATCAAATG 22259 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||| || || || || ||||| || || ||||| | || || | ||||| Sbjct 22260 ATATGTTCTGATTGCAGAGTCAATATCATCCTTGTGGATTCCAACAGCAACTCTCATCAG 22319 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| ||||| || | |||||| | ||| | ||| | || || || | || || Sbjct 22320 CATGTGCTGCGGCCTTTCTACTGCTTTTCCAGAAGCTTTTAGGAGATAGGACCTCTCGAG 22379 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||||||| ||||| |||| || || |||| || ||||| || Sbjct 22380 AGTTTTAAAACCAAAGTAGTCATAATCGAAATCTCGGTCATAAATTAT 22427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686679063351840