Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1259 109 5e-19 seq167 95.1 1e-14 seq26 95.1 1e-14 >seq1259 Length=190105 Score = 109 bits (120), Expect = 5e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || || |||||| | | |||| |||||||||||||||| ||| Sbjct 49440 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTT-CCG 49382 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | |||||||| || ||||||| || Sbjct 49381 GCGAAGATGAGGCGCTGCTGGTCCGGGGG-ATGCCCTCTTTGTCCTGGATCTTGGCCTTG 49323 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | |||||||||||||| Sbjct 49322 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTC 49263 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 49262 TTCACGAAGATCTGCAT 49246 >seq167 Length=1102902 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||| || || ||| | | |||| ||||||| ||||| || ||| Sbjct 191608 GTGGACTCCTTTTGAATGTTATAATCGGCGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCG 191667 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || ||||| || | ||||||||||| ||||||| || Sbjct 191668 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 191727 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || | ||| || | ||||| || || || Sbjct 191728 ACGTTGTCGATCGTGTCCGACGACTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTC 191787 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 191788 TTGACGAAGATCTGCAT 191804 >seq26 Length=2273700 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || ||| |||| |||||||| || ||||| | || || Sbjct 490729 ACCAAATGAAGAGTAGATTCCTTT-GAATGTTGTAGTCCGCCAACGTGCGCCCATCCTCC 490671 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||||||| || | ||||||||||| |||||||| || | ||||| ||||| | Sbjct 490670 AACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGG 490611 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | || || || || || || | || Sbjct 490610 ATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTCTTT 490551 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 490550 CCAGTGAGGGTCTTCACAAAGATCTGCAT 490522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || ||| |||| |||||||| || ||||| | || || Sbjct 453216 ACCAAATGAAGAGTAGATTCCTTT-GAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCC 453158 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||| ||| || | ||||||||||| ||||| || || | ||||| ||||| | Sbjct 453157 AGCTGTT-ACCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 453099 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || || ||||| | | || || || || || || | | | Sbjct 453098 ATCTTAGCCTTTACATTGTCAACGGTGTCGGAGCTCTCTACCTCAAGGGTGAT-GGTCTT 453040 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||| ||||| Sbjct 453039 CCGGTAAGAGTCTTCACAAAGATCTGCAT 453011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424795833672672