Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq859 87.8 6e-12 seq195 84.2 7e-11 >seq859 Length=348630 Score = 87.8 bits (96), Expect = 6e-12 Identities = 125/175 (71%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 |||| |||||| || || || ||||| | || || || | || || ||| ||| Sbjct 128280 TTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCCTTC 128339 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 || || ||||||||| | || |||||||| || |||| || || ||||| ||||| Sbjct 128340 TGC-TCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGA 128398 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 || ||| || |||||||| | || |||||||||||||| || |||||| || Sbjct 128399 GCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCC 128453 >seq195 Length=1014778 Score = 84.2 bits (92), Expect = 7e-11 Identities = 125/176 (71%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| ||||| || || || || ||| || || || | || || |||| ||| Sbjct 873490 CTTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCCTT 873549 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | |||||||||||| | || ||||| || || |||| || |||||||| |||| Sbjct 873550 CTGT-TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAACG 873608 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 | || ||| || |||||||| | || |||||||||||||| || |||||| || Sbjct 873609 AGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCC 873664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587791500550420