Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq199 122 1e-22 seq29 122 1e-22 seq859 118 1e-21 seq195 102 1e-16 seq52 98.7 1e-15 seq3 89.7 6e-13 seq94 86.0 8e-12 >seq199 Length=986226 Score = 122 bits (134), Expect = 1e-22 Identities = 232/336 (69%), Gaps = 7/336 (2%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 ||| |||||||| | ||||| ||||| ||||| || | || ||||| | ||||| Sbjct 367558 ATCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTTCAAA 367617 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 ||||||||||| || | | ||||||| |||||||||||||||||||| | | | Sbjct 367618 CCCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATT--CCCACCT 367675 Query 11602 ACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | | || | | | |||| | || || |||||||||||||| | || | || || Sbjct 367676 CCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCA-CAAAATGATGCAA 367734 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || ||| | | ||| ||||| || || | | ||||| ||||||||| Sbjct 367735 GGCGCATTCTCTTTGGCCTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAACA 367794 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 |||||||| ||||| | | | |||| | || || ||||| ||| || |||||| || Sbjct 367795 AACATCTCTACAAACTCAGAGCCAGA-AATTGAGAAAAATGGAACACCTGCTTCACCAGC 367853 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || ||| || | || || || || ||||| Sbjct 367854 AATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGG 367889 >seq29 Length=2149955 Score = 122 bits (134), Expect = 1e-22 Identities = 323/489 (66%), Gaps = 7/489 (1%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | || | ||| ||| || || || | || || ||||| ||| Sbjct 523366 TCAAAGCGTCCGGGCCTTAGCAAAGCGGAATCTAGAATGTCTGCACGGTTTGTGGCTGCA 523425 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 || || | ||| ||||| | ||||| ||||||||||| || | | ||||||| Sbjct 523426 ATTACTATAATACCAGTATTTCCTTCAAAACCATCCATCTCTGTCAAAAGCTGATTAAGA 523485 Query 11573 GTTTGTTCTCTCTCATCATT--TGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCG 11630 ||||||||||| |||||||| | || || ||| | | | |||| | || || | Sbjct 523486 GTTTGTTCTCTTTCATCATTCCTCCTCCAAT---ACCTGTTCCTCTTTGCCTTCCAACAG 523542 Query 11631 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 11690 ||||||| ||||||| || ||||| ||||| ||| || ||| | | || |||| Sbjct 523543 CATCAATTTCATCAACAAACACAATGCATGGAGCATTCTCTTTGGCCTTCTTGAAAAGAT 523602 Query 11691 CGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT 11750 | ||||| | | ||||| || |||||||||||||| ||||| | | | || | | Sbjct 523603 CACGAACTCGTGAAGCACCAACTCCAACAAACATCTCTACAAACTCCGACCCTGA-AATT 523661 Query 11751 G-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 | || ||||| ||| || ||| || || || || || || | ||||| || || Sbjct 523662 GAGAAAAATGGAACACCTGCTTCTCCTGCAATTGCCTTAGCAAGCAAAGTCTTCCCAGTT 523721 Query 11810 CCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTC 11869 || || ||| | ||||| | ||| || || ||||| | || | |||| Sbjct 523722 CCCGGAGGACCAACAAGAAGAACACCTTTAGGAATACGAGCACCTACTGCAGTAAATCTT 523781 Query 11870 TCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCC 11929 || |||| ||| | ||| ||||| | ||| || || | |||||| | || | || Sbjct 523782 TCAGGTTTCTTCAAAAACTCCACCACCTCCATAAAATCCTGTTTGGCTTCATCTACTCCA 523841 Query 11930 TCAACATCA 11938 |||||||| Sbjct 523842 GCAACATCA 523850 >seq859 Length=348630 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || ||||||||||| Sbjct 128426 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACC 128367 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | |||| |||||| || || ||||||||||| ||||| || Sbjct 128366 ACGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGC 128307 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| |||| ||||| |||||||| || Sbjct 128306 GGCAAATGCAACGAGGCGCTCGGCGAAAGA 128277 >seq195 Length=1014778 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 873637 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 873578 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | ||||| || |||||||||||||| ||||| ||| Sbjct 873577 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 873518 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 | || || | ||||| || ||||||||| Sbjct 873517 AGAGAAGGCCACGAGGCGCTCCGCGAAGGAG 873487 >seq52 Length=1645480 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/317 (68%), Gaps = 9/317 (3%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || || ||||||||||| | | Sbjct 1429826 AAACCATCCATTTCCGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCCA--C 1429769 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | || || | || ||| | ||||||||||||||||| || ||||||||||| | Sbjct 1429768 CTCCGAGACCGGCCCCCCGCTGCCTCCCCACCGCATCAATCTCGTCGATGAAGACAATGC 1429709 Query 11658 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 | || | ||| | ||| | || || | ||| || || | || || || ||| Sbjct 1429708 AGGG--GCTTTCGACTTGGCCTTCTCGAACAAATCCCGGACACGAGAAGCTCCAACTCCA 1429651 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || || | |||||| || | | ||| | |||| || ||| || || | || || Sbjct 1429650 ACGAAGAGCTCCACGAATTCGGAGGCGGCGCACGAGAAGAAAGGCAC-CCGGCCTCGCCG 1429592 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 |||| ||| ||||| ||||| |||||||| || || || ||| | | ||| |||| Sbjct 1429591 GCGACGGCCCGGGCCAGGAGAGTCTTTCCGGTGCCGGGAGGACCGACCAAGAGGCAGCCT 1429532 Query 11837 CGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 1429531 -TGGGGATCTTGGCGCC 1429516 >seq3 Length=3667290 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || || | ||| || | |||||||||||| ||||||||| || | Sbjct 2996179 AAACCATCCATTTCAGTAAGCAGTTGGTTCAATGTTTGTTCTCTTTCATCATTTCCT--C 2996122 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | || | | | |||| | || || ||||||||||| ||||||||||| | || Sbjct 2996121 CTCCAATTCCTGTTCCTCTTTGCCTTCCTACTGCATCAATCTCGTCAATGAAGACCAGAC 2996062 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 |||| |||| | || | | ||| | ||| | ||| || || || ||||| | Sbjct 2996061 ATGGAGAATTTGCTTTTGCCTTATTAAACAAATCCCTAACTCTCGAAGCCCCTACACCGA 2996002 Query 11718 CAAACATCTC 11727 |||||||||| Sbjct 2996001 CAAACATCTC 2995992 >seq94 Length=1461416 Score = 86.0 bits (94), Expect = 8e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || || |||||||||||||| ||||| || ||| | |||| |||||| || || Sbjct 1165274 GCAATCGATGCCAAATTGCACACAGCAGTTTCAGTAGGACTTGTGAACTCTATTATCTCA 1165215 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 ||||||||||| ||| ||| || ||||||| ||| | ||| ||||| ||| | ||||| Sbjct 1165214 GTACATAAGTTTGAAGACTTGATAGTCCCCAGATTTTGTTGATTACTTTTC-TATTGCAA 1165156 Query 111356 GCATCCT 111362 | ||||| Sbjct 1165155 GTATCCT 1165149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627821954697600