Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq195 152 6e-32 seq859 134 2e-26 seq199 96.9 4e-15 >seq195 Length=1014778 Score = 152 bits (168), Expect = 6e-32 Identities = 195/264 (74%), Gaps = 11/264 (4%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| || || |||||| ||| || |||||||| || Sbjct 873637 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 873578 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | ||| || ||||| ||||||||||||||||| ||| Sbjct 873577 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 873518 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG--CG-GGACTTTGTATCAAACCACTTCAT 130203 | ||| || | ||| ||||| || |||||| || |||| |||| |||| | Sbjct 873517 AGAGAAGGCCACGAGGCGCTCCGCGAAGGAGTCCGAGGAC------TCAATCCACCGGAG 873464 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||||||| ||||| ||| | | |||||| |||| || || | || || | | Sbjct 873463 CGCCCACTGGGCCTTCTTCGCCACCGCCGGGACCGTCTCGACAGC-ACGAAAAG-GCGGT 873406 Query 130264 CTTTTCTGATGGATCTTTGATGTA 130287 |||||| || ||||||||||| Sbjct 873405 CTTTTCGTCAGGGTCTTTGATGTA 873382 >seq859 Length=348630 Score = 134 bits (148), Expect = 2e-26 Identities = 313/454 (69%), Gaps = 21/454 (5%) Strand=Plus/Minus Query 129841 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG 129900 ||| ||||||| ||| |||||||||||| |||| || |||||| || | || Sbjct 128610 GAGCCGATCCGCCACGAACTCAATGTACTGGCTCATCAAATCCCCGTTCATCCC-ACCAG 128552 Query 129901 -GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGA 129959 | || || |||||||| | | |||| || |||||||||||||||| || | || Sbjct 128551 CGCCACC-GGCAGCGCGTCGCA-ACGAACTCCCTCTCAATGTCCACAGCGTCGGCGATGA 128494 Query 129960 TGGCGTGAATG--GTC-TCCGTGCCAGGT--CTATTGCGCAAAGTCTTGAAGAGTTCCAC 130014 | | | ||| ||| |||| | || | | ||| | | | | || ||| || Sbjct 128493 TCGACTTGATGCGGTCCTCCGAG--AGCTTGCGGTTGAGGAGGGAGTAGAGGAGG--CA- 128439 Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 ||| || || |||||| |||||||| ||||||||||| || || |||||| || || Sbjct 128438 GGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCC 128379 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | || || ||||||||||||||||| Sbjct 128378 CGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCAGAGAAGAAGAT 128319 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 |||||| || || || |||| ||| ||||| || || || ||| | || | Sbjct 128318 CCCCTCAACGGCGGCAAATGCAACGAGGCGCTCGGCGAAAGACTCGGA---GGACTCGAT 128262 Query 130195 CCACTTCATCGCCCACTGCGCCTT-TTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 |||| | ||||| || ||||| ||| || | ||||||||||| || || | | Sbjct 128261 CCACCGGAGGGCCCATTGGGCCTTCTTTGTC-ACCGCCGGGACGGTCTCGA-CGGCGCGA 128204 Query 130254 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 | || | ||||||| ||||| |||||||| Sbjct 128203 AAAG-GCGATCTTTTCGTCCGGATCCTTGATGTA 128171 >seq199 Length=986226 Score = 96.9 bits (106), Expect = 4e-15 Identities = 256/382 (67%), Gaps = 12/382 (3%) Strand=Plus/Plus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 || |||||||| || || || || || || |||| || || || | ||||| Sbjct 367559 TCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTTCAAAC 367618 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 ||||||||||||||||| || ||||| | |||||||| | ||||||||| || | | Sbjct 367619 CCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCCA--CCTC 367676 Query 14216 CCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATG 14273 | | || | | | |||| | || || || ||||| ||||| | |||| ||| || | Sbjct 367677 CAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCA-CAAAATGATGCAAG 367735 Query 14274 GTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 | ||| || ||| |||| ||| | ||| || |||| ||||| ||||| || Sbjct 367736 GCGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAAC 367793 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCG 14390 ||||||||| ||||| | | | | ||| |||| || || || || | |||||| | Sbjct 367794 AAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCACCAG 367852 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCAC 14450 | || || ||| || | || ||||| || ||||| || ||||| |||| Sbjct 367853 CAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGGAGGACCAATAAGAAGAACACCCT 367912 Query 14451 GTGGGATCCTGGCACC-ACTGC 14471 ||| |||| ||||| ||||| Sbjct 367913 TTGGAATCCGTGCACCTACTGC 367934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618228364347360