Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq859 158 1e-33 seq29 140 4e-28 seq195 131 2e-25 seq199 122 1e-22 seq52 105 8e-18 seq3 86.0 7e-12 >seq859 Length=348630 Score = 158 bits (174), Expect = 1e-33 Identities = 125/150 (83%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| | |||||||| |||||||| |||||||||||||| ||| Sbjct 128277 TCTTTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCC 128336 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||| |||| | |||||||||||||| ||||||||||| || ||| |||||||||| Sbjct 128337 TTCTGCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAAC 128396 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 128397 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 128426 >seq29 Length=2149955 Score = 140 bits (154), Expect = 4e-28 Identities = 306/447 (68%), Gaps = 15/447 (3%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | || | ||| ||| || || || | || || || || || Sbjct 523366 TCAAAGCGTCCGGGCCTTAGCAAAGCGGAATCTAGAATGTCTGCACGGTTTGTGGCTGCA 523425 Query 9587 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || || | |||||| || ||| || ||||||||||||||||||||||||| || |||| Sbjct 523426 ATTACTATAATACCAGTATTTCCTT--CAAAACCATCCATCTCTGTCAAAAGCTGATTAA 523483 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9704 ||||||||| | |||||||||| || | ||| | | | |||| |||| || | Sbjct 523484 GAGTTTGTTCTCTTTCATCATTC-CTCCTCCAATACCTGTTCCTCTTTGCCTTCCAACAG 523542 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGA 9763 ||||||| ||||||| || || |||||||| ||| || | | ||| ||| ||| Sbjct 523543 CATCAATTTCATCAACAAACACAATGCATGGAGCATTCTCTTTGGCCTTCTTGAAA-AGA 523601 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || || || || || |||||||||||||| ||||| | | | ||| || Sbjct 523602 TCACGAACTCGTGAAGCACCAACTCCAACAAACATCTCTACAAACTCCGACCCTGAA-AT 523660 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || || || || ||| | ||| || ||||| || || || | |||||| || || Sbjct 523661 TGAGAAAAATGGAACACCTGCTTCTCCTGCAATTGCCTTAGCAAGCAAAGTCTTCCCAGT 523720 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGT--A 9939 || || ||| | || || ||||| ||||| || || ||| | ||| | Sbjct 523721 TCCCGGAGGACCAACAAGAAGAACACCTTTAGGAATACGAGCACCTACTGC---AGTAAA 523777 Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||| ||||||| ||| | ||| ||||| Sbjct 523778 TCTTTCAGGTTTCTTCAAAAACTCCAC 523804 >seq195 Length=1014778 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| | || || | ||||||||| ||||||||||| || ||| Sbjct 873488 TCCTTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCC 873547 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||||| | || | |||||||||||||| || |||||||| || || |||||||||| Sbjct 873548 TTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAAC 873607 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 873608 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 873637 >seq199 Length=986226 Score = 122 bits (134), Expect = 1e-22 Identities = 237/340 (70%), Gaps = 15/340 (4%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9613 ||| |||||||| | ||||| || || || || |||| || || || ||| || || Sbjct 367558 ATCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTT--CA 367615 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||| ||||| || || |||| ||||||||| | ||||||||| | | Sbjct 367616 AACCCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCC--AC 367673 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || | | | |||| |||| || |||||||||||||| | || | ||||| Sbjct 367674 CTCCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCA-CAAAATGATGC 367732 Query 9732 ATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | || ||| || || |||| ||| ||||| || || || || || ||||| Sbjct 367733 AAGGCGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACC 367790 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 |||||||||||| ||||| | | | | ||| |||| || || || ||| | ||||| Sbjct 367791 AACAAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCAC 367849 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | ||||| || ||| || | || || || || ||||| Sbjct 367850 CAGCAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGG 367889 >seq52 Length=1645480 Score = 105 bits (116), Expect = 8e-18 Identities = 218/318 (69%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||| || ||||| || || |||||||| || |||| ||||||||| | | Sbjct 1429826 AAACCATCCATTTCCGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--AC 1429769 Query 9674 ATAC--CACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | ||| || | || ||| | ||||| ||||||||||| || |||||||| |||| Sbjct 1429768 CTCCGAGACCGGCCCCCCGCTGCCTCCCCACCGCATCAATCTCGTCGATGAAGACAATGC 1429709 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | | | ||||| | || || || | |||||| ||||| || || || || Sbjct 1429708 AGG---GGCTTTCGACTTGGCCTTCTCGAACAAATCCCGGACACGAGAAGCTCCAACTCC 1429652 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||| || | |||||| || | | ||||| || || ||| || || | || || Sbjct 1429651 AACGAAGAGCTCCACGAATTCGGAGGCGGCGCACGAGAAGAAAGGCAC-CCGGCCTCGCC 1429593 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | ||| ||||| || |||||||| || || || || ||| | | |||| || Sbjct 1429592 GGCGACGGCCCGGGCCAGGAGAGTCTTTCCGGTGCCGGGAGGACCGACCAAGAGGCAGCC 1429533 Query 9910 TCGTGGAATCTTGGCGCC 9927 | | || ||||||||||| Sbjct 1429532 TTG-GGGATCTTGGCGCC 1429516 >seq3 Length=3667290 Score = 86.0 bits (94), Expect = 7e-12 Identities = 169/248 (68%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || || |||||||| || || |||| || || | || | || Sbjct 2996237 ATCAAGAATTTCTGGTCGGTTCGTCGCAGCAATTACAATAACTCCACTATCCCCACTGAA 2996178 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || || | |||||||| | |||||||| | ||||||||| || | | Sbjct 2996177 ACCATCCATTTCAGTAAGCAGTTGGTTCAATGTTTGTTCTCTTTCATCATTTCCT--CCT 2996120 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | | || | | | |||| |||| || ||||||||||| ||||||||||| | ||| Sbjct 2996119 CCAATTCCTGTTCCTCTTTGCCTTCCTACTGCATCAATCTCGTCAATGAAGACCAGACAT 2996060 Query 9734 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 || |||| | || | ||| | ||||| || | | || || ||||| ||| Sbjct 2996059 GGAGAATTTGCTTTTGCCTTATTAAACAAATCCCTAACTCTCGAAGCCCCTACACCGACA 2996000 Query 9794 AACATCTC 9801 |||||||| Sbjct 2995999 AACATCTC 2995992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583065728425440