Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq859 214 2e-50 seq195 190 2e-43 >seq859 Length=348630 Score = 214 bits (236), Expect = 2e-50 Identities = 381/544 (70%), Gaps = 18/544 (3%) Strand=Plus/Plus Query 59584 TGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCG 59643 |||||| |||| ||||| || ||| || |||||| ||| ||||||| | || ||| Sbjct 127891 TGTGGGAGATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTCT 127950 Query 59644 CCGGAGACCTGAAGGATTGGG---ACAAGCTCAATTACGACGAGCAGCATTTCATCAAGA 59700 || | || || | ||| ||| |||| |||||||| || || ||| Sbjct 127951 CCAGCGATCTCCCC-ACTGGCTCCACACCCTCACCACCGACGAGCGCCACTTTATCTCCC 128009 Query 59701 TGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACT 59760 |||| ||||||||||| || || || || || | || || | | | | || Sbjct 128010 ACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCT 128069 Query 59761 TT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTC 59816 | ||| || |||||||| ||||||| || | ||||||| | ||| ||| | Sbjct 128070 TCATGTCC---GACGTCCAGATCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGC-C 128125 Query 59817 AACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCG 59876 | |||| ||||||||||||| |||||| ||| | |||| | ||||||||||| Sbjct 128126 ATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCG 128185 Query 59877 GAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCA 59936 || || ||| | | || ||| | ||| | ||||| ||| || || | | | || || Sbjct 128186 GACGAAAAGA-TCGCCTTTTC-GCGCCGTCGAGACCGTCCCGGCGGTGACAAAGAAGGCC 128243 Query 59937 GAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTT 59994 |||||||| | | |||||| ||||||| ||| || || || | || ||| | || | Sbjct 128244 CAATGGGCCCTCCGGTGGATCGAGTCCTCCGAG--TCTTTCGCCGAGCGCCTCGTTGCAT 128301 Query 59995 TTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAA 60054 |||| ||| || || ||||||||||||||||| ||||| |||| ||||||||||| | Sbjct 128302 TTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCCTTCTGCTCTATCTTCTGGCTCAAGA 128361 Query 60055 AGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCC 60114 ||||||| ||||||||||| || | |||||||||||||| || ||||| |||||||||| Sbjct 128362 AGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 128421 Query 60115 TCCA 60118 |||| Sbjct 128422 TCCA 128425 >seq195 Length=1014778 Score = 190 bits (210), Expect = 2e-43 Identities = 409/595 (69%), Gaps = 20/595 (3%) Strand=Plus/Plus Query 59532 CTCGCGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGGCC 59591 ||||| |||| | ||| || ||| | | || || || |||||||| | |||||| Sbjct 873054 CTCGC-CCGACC-CCGACCGCTTCTCGATGTTCCCCATCCGGTACCCCCAGGTGTGGGAG 873111 Query 59592 CTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGAC 59651 |||| ||||| || ||| || |||||| ||| ||||||| | |||||| ||| ||| Sbjct 873112 ATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGACCTCTCCGCCGAC 873171 Query 59652 CTGAAGGATTGGG---ACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTG 59708 || | ||| ||| |||| |||||||| || |||||| ||||| Sbjct 873172 CTCCCC-ACTGGCTCCACACCCTCACCCCCGACGAGCGCCACTTCATCTCCCACGTCCTT 873230 Query 59709 GCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT---TCC 59765 || |||||||| || || || || || | || || | | || ||| ||| Sbjct 873231 GC-TTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCACCCGCTTCATGTCC 873289 Query 59766 AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCT 59825 || ||||||||||||||||| || | ||||||| | ||| || ||| | Sbjct 873290 ---GACGTCCAGATTGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATAGCCATCGAAAC- 873345 Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 ||||||||||||| ||| || || || | || | |||| || || || || ||| Sbjct 873346 ATCCACTCCGAGATGTATTCTCTTTTGCTGGAATCCTACATCAAAGACCCTGACGAAAAG 873405 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 | | || ||| |||| | |||||| ||| || || | || || | ||||| Sbjct 873406 ACCGC-CTTTTC-GTGCTGTCGAGACGGTCCCGGCGGTGGCGAAGAAGGCCCAGTGGGCG 873463 Query 59946 ATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-G 60003 | | |||||| ||||||| | | || || || | || ||| | || || | ||| | Sbjct 873464 CTCCGGTGGATTGAGTCCTCGGAC-TCCTTCGCGGAGCGCCTCGTGGCCTTCTC-TGCTG 873521 Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063 | || || ||||||||||| ||||| |||||| | || ||||||||||| ||||| |||| Sbjct 873522 TTGAGGGGATCTTCTTCTCCGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCC 873581 Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||| |||| |||||||||||||| || ||||| |||||||||||||| Sbjct 873582 TCATGCCGGGGCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCA 873636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548341345880640