Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq859 114 1e-20 seq449 91.5 2e-13 seq45 91.5 2e-13 seq204 89.7 6e-13 seq15 89.7 6e-13 seq6 89.7 6e-13 seq703 87.8 2e-12 seq273 86.0 7e-12 seq85 86.0 7e-12 seq24 86.0 7e-12 seq548 84.2 2e-11 >seq859 Length=348630 Score = 114 bits (126), Expect = 1e-20 Identities = 278/412 (67%), Gaps = 12/412 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||| | ||| ||||| | |||||||| ||| |||| Sbjct 128383 AGCCCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCAGAGAAG 128324 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 ||||| || || || ||||| || || ||||| | ||||| | ||||| | | Sbjct 128323 AAGATCCCCTCAACGGCGGCAAATGCAACGAGGCGCTCGGCGAA---AGACTCGGAGGAC 128267 Query 74925 ---ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 ||||| | ||||||| || || | | ||||| ||||| || |||| || Sbjct 128266 TCGATCCACCGGAGGGCCCATTGGGCCTTCTTTGTCACCGCCGGGACGGTCTCGA-CGGC 128208 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTA 75040 ||| |||| ||| || || |||||||||| | || | || | | || ||||| Sbjct 128207 GCGAAAAGGC-GATCTTTTCGTCCGGATCCTTGATGTAGGAT-TCGAGGAGGAGGGAGTA 128150 Query 75041 CGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 | |||| || || || |||| || ||| |||| | ||||||| | || ||||| | Sbjct 128149 CATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGG 128091 Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 ||||| || || || | | ||| ||||| | |||||||||||| |||| Sbjct 128090 GGATCTGGACGTCGGACATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGG 128031 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG 75211 ||||||| || || || | ||||||||||||||| ||| ||||| Sbjct 128030 CGGCGAAGAAGGCGAGGATGTGGGAGATAAAGTGGCGCTCGTCGGTGGTGAG 127979 >seq449 Length=546654 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 116397 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 116456 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 116457 TGAGCTACGAAAGCA 116471 >seq45 Length=1796210 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1023519 CTGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 1023578 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1023579 CTGAGCTATGAAAGC 1023593 >seq204 Length=993586 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 534476 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 534417 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 534416 TGAGCTACGAAAGC 534403 >seq15 Length=2754154 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1822237 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1822178 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1822177 TGAGCTACGAAAGC 1822164 >seq6 Length=3235028 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 349776 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 349717 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 349716 TGAGCTACGAAAGC 349703 >seq703 Length=414581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| | || | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 293218 TGCTTTCGTTAAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 293159 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 293158 TGAGCTACGAAAGCA 293144 >seq273 Length=819442 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 127818 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 127877 Query 79684 TGAGCTACGAAAGC 79697 ||||| |||||||| Sbjct 127878 TGAGCCACGAAAGC 127891 >seq85 Length=1476802 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 626505 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 626446 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 626445 TGAGCTATGAAAGC 626432 >seq24 Length=2186869 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1287309 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1287250 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1287249 TGAGCTATGAAAGC 1287236 >seq548 Length=492958 Score = 84.2 bits (92), Expect = 2e-11 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 79642 GATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAATTGAGCTACGAAAGCAAA 79700 || |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 434749 GAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGAGCTACGAAAGCAAA 434690 Query 79701 A 79701 | Sbjct 434689 A 434689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547032983608800