Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq167 127 2e-24 seq4 114 1e-20 seq26 113 4e-20 seq297 111 1e-19 seq155 109 5e-19 seq630 98.7 9e-16 seq782 86.0 5e-12 >seq167 Length=1102902 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || ||| | || || || |||| Sbjct 191804 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTCGAGTCGTCG 191745 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || || ||||| ||||| || || || || Sbjct 191744 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCGGACCAG 191685 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||||||| | ||| | ||||||| ||| Sbjct 191684 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTCGCCGATTATAAC 191625 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || | || | ||| | || || ||||| Sbjct 191624 ATTCAAAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGTGGAGGCAT 191575 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || || ||||||||| | || || | || || || || Sbjct 191577 CATGCAGATATTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTC 191518 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| || |||||||| || ||||| || || || || || Sbjct 191517 GGACACGATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAAGGTATTCCGCCGGACCA 191458 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||| || ||| | || ||| || ||| | ||||||| || Sbjct 191457 GCAGCGTCTGATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACCCTCGCCGATTATAA 191398 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| ||||| ||||| || | ||| |||| Sbjct 191397 CATCCAAAAAGAGTCTACTCTCCATCTGGT 191368 >seq4 Length=3455462 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || |||||||| || || || Sbjct 2201270 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACTCTTGAGGTCGAGAGCTCG 2201211 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || |||||||| ||||| |||||||| || || || || Sbjct 2201210 GACACGATTGACAACGTGAAGGCTAAAATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 2201151 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || ||| |||| || | ||| | | ||||| ||| Sbjct 2201150 CAGCGTTTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACCCTGGCGGATTATAAC 2201091 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||||||||| || | || ||||| | || | || |||||| Sbjct 2201090 ATCCAAAAGGAGTCTACTCTTCACTTGGTGCTCCGCCTCCGTGGTGGC 2201043 >seq26 Length=2273700 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| |||||| | || || |||||||| ||| || Sbjct 441374 ATGCAGATCTTTGTTAAGACTCTGACTGGCAAGACCATCACCCTTGAAGTTGAAAGCTCT 441433 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || |||||||| || ||||| || || || ||| Sbjct 441434 GATACAATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAA 441493 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||||||| | || || || || | | || |||||| Sbjct 441494 CAGAGGCTTATTTTCGCCGGCAAACAGCTTGAGGATGGTCGCACACTGGCTGACTACAAC 441553 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || |||||||| | ||| | ||| | || | |||||||||| Sbjct 441554 ATTCAGAAAGAGTCGACGCTCCATCTTGTTCTCCGACTCAGGGGTGGCAT 441603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || || || || ||| | || || || || || || || Sbjct 442556 CATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTAGAGAGCTC 442615 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || ||||| || || || || ||||| ||||| ||||| Sbjct 442616 TGACACCATTGACAATGTAAAGGCTAAAATCCAGGATAAGGAGGGCATCCCACCAGATCA 442675 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || || || || |||| || | || | | || ||||| Sbjct 442676 GCAGCGGCTCATCTTTGCTGGTAA-CAGCTGGAGGATGGGCGCACGCTGGCAGACTACAA 442734 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || || | |||||||| | || | || ||||| || Sbjct 442735 CATTCAAAAGGAATCTACTCTTCATTTGGTCCTCCGCCTTCGTGGTGGGAT 442785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | || ||||| |||||||| || Sbjct 453236 ATGCAGAT-TTTGTGAAGACCCTGACTGGGAAGACCATCACTCTGGAAGTGGAGAGCTCG 453294 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| ||||| || || || ||||| Sbjct 453295 GACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAG 453354 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || || | || || | ||| | | || |||||| Sbjct 453355 CAGAGGCTTATTTT-GCCGGGAAGCAGCTTGAGGATGGGCGTACCCTGGCGGACTACAAC 453413 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || ||||||||||| || | ||| | || |||| Sbjct 453414 ATCCAAAAGGAGTCCACTCTTCATCTTGTCCTGCG 453448 >seq297 Length=752846 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| || || || Sbjct 217480 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACAATCACCCTTGAGGTTGAGAGCTCA 217539 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || ||||| |||||||| || || ||||| ||||| Sbjct 217540 GACACCATTGATAATGTGAAAGCTAAGATTCAGGACAAAGAGGGGAT-CCACCTGATCAG 217598 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || ||||| || || ||| | | || || ||| Sbjct 217599 CAGCGCCTGATCTTTGCTGGGAAGCAGTTGGAGGATGGTCGCACCTTGGCAGACTATAAC 217658 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||||||||| || ||||| | || | |||| ||||| Sbjct 217659 ATCCAAAAGGAGTCGACCTTGCACCTGGTTCTCCGCCTAAGGGG-GGCAT 217707 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| || ||| | || ||| | || ||||| ||| Sbjct 217934 ATGCAGATCTTTGTCAAGACTCTGACAGGGAAGACGATCACTTTGGAGGTGGAGAGCTCC 217993 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| ||||| ||||| ||||| || || || || || Sbjct 217994 GACACCATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAAGGAAT-CCTCCAGACCAG 218052 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||| | || || | || | | ||||||||| Sbjct 218053 CAGCGTCTTATCTTTGCTGGAAAGCAACTTGAGGATGGACGCACGCTGGCAGATTACAAC 218112 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210 ||||| ||||| || ||||| || ||||| |||| || ||| Sbjct 218113 ATTCAGAAGGAATCTACCTT-CACTTGGTGATGCGGCTGAGGG 218154 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| | || || ||| | ||||| | || ||||| || Sbjct 218159 ATGCAGATCTTTGTTAAGACTTTAACAGGGAAGACAATTACCTTGGAGGTGGAGAGTTCT 218218 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| ||||| ||||| || |||||||| || ||||| Sbjct 218219 GACACCATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATACCCCCTGATCAG 218278 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||| || || |||| || || || || | || |||||| Sbjct 218279 CAGCGCCTCATCTTTGCCGGGAAGCAGCTGGAGGATGGTCGCACTCTTGCAGACTACAAC 218338 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || || || | || | || ||||| | || ||||| Sbjct 218339 ATTCAGAAAGAATCAACTCTTCACCTTGTCCTGCGTCTCCGTGGTGG 218385 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || | || || || || || ||| |||| || ||||| || || || Sbjct 217705 CATGCAGATCTTCATCAAGACCCTTACAGGGAAGACTATCACCCTTGAGGTTGAGAGCTC 217764 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || ||| ||| ||||| || || || ||||| ||||| ||||| Sbjct 217765 AGACACCATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGCATCCCACCTGATCA 217824 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | |||| || || || || | || || || || | | |||||||| Sbjct 217825 GCAGCGCCTGATATTTGCTGGGAAGCAGCTTGAGGATGGTCGCACATTAGCAGATTACAA 217884 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| ||||| || | || ||||| | || || | ||||| || Sbjct 217885 CATCCAAAAAGAGTCCACTCTTCACTTGGTCCTCCGATTAAGAGGTGGAAT 217935 >seq155 Length=1009872 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || || || || ||| | || || ||||| ||||| | | Sbjct 940410 CCATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCTT 940351 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||||| | || |||| ||||| || || || ||||| || ||||| || || |||| Sbjct 940350 CCGACACAATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATC 940291 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | |||||| || || | || || | |||| | |||| |||| Sbjct 940290 AGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGGACCCTCGCCGACTACA 940231 Query 27166 ACATTCAAAAGGAGTCGACC 27185 ||||||| |||||||| ||| Sbjct 940230 ACATTCAGAAGGAGTCCACC 940211 >seq630 Length=471042 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| ||||||| || || | || | || Sbjct 36100 CATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATTACCCTCGAGGCAGAGTCCTC 36041 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| || || || ||||| || ||||| ||||| || || Sbjct 36040 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCAGACCA 35981 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| || || | || ||| | ||| | |||||||||| Sbjct 35980 GCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTACAA 35921 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || |||||||| || | || | || | || | ||||||||| Sbjct 35920 CATCCAGAAGGAGTCCACTCTCCACCTCGTCCTCCGCCTCCGGGGTGGC 35872 >seq782 Length=366579 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27078 CAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTG 27137 || ||||| || || ||||| || |||||||| | || || | ||| || ||||| ||| Sbjct 137959 CAGGACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTG 138018 Query 27138 GAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||| | ||| | | ||||||||||||||||| ||||| || || ||| ||||| Sbjct 138019 GAAGATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTT 138078 Query 27198 TT 27199 || Sbjct 138079 TT 138080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434772941541120